[Date Prev][Date Next] [Thread Prev][Thread Next] [Date Index] [Thread Index]

Bug#321180: marked as done (ITP: sim4 -- tool for aligning cDNA and genomic DNA [med-bio])

Your message dated Sun, 07 Aug 2005 07:36:23 -0700
with message-id <E1E1mGF-0003Kp-00@spohr.debian.org>
and subject line Bug#321180: fixed in sim4 0.0.20030921-1
has caused the attached Bug report to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what I am
talking about this indicates a serious mail system misconfiguration
somewhere.  Please contact me immediately.)

Debian bug tracking system administrator
(administrator, Debian Bugs database)

Received: (at submit) by bugs.debian.org; 3 Aug 2005 22:50:44 +0000
>From naoliv@biolinux.df.ibilce.unesp.br Wed Aug 03 15:50:44 2005
Return-path: <naoliv@biolinux.df.ibilce.unesp.br>
Received: from biolinux.df.ibilce.unesp.br [] 
	by spohr.debian.org with esmtp (Exim 3.36 1 (Debian))
	id 1E0S4R-0004oB-00; Wed, 03 Aug 2005 15:50:43 -0700
Received: by biolinux.df.ibilce.unesp.br (Postfix, from userid 1000)
	id 94D4B20608E; Wed,  3 Aug 2005 19:50:11 -0300 (BRT)
Content-Type: text/plain; charset="us-ascii"
MIME-Version: 1.0
Content-Transfer-Encoding: 7bit
From: "Nelson A. de Oliveira" <naoliv@biolinux.df.ibilce.unesp.br>
To: Debian Bug Tracking System <submit@bugs.debian.org>
Subject: ITP: sim4 -- tool for aligning cDNA and genomic DNA [med-bio]
X-Mailer: reportbug 3.15
Date: Wed, 03 Aug 2005 19:50:11 -0300
X-Debbugs-Cc: debian-devel@lists.debian.org
Message-Id: <[🔎] 20050803225011.94D4B20608E@biolinux.df.ibilce.unesp.br>
Delivered-To: submit@bugs.debian.org
X-Spam-Checker-Version: SpamAssassin 2.60-bugs.debian.org_2005_01_02 
	(1.212-2003-09-23-exp) on spohr.debian.org
X-Spam-Status: No, hits=-11.0 required=4.0 tests=BAYES_00,HAS_PACKAGE,
	X_DEBBUGS_CC autolearn=ham version=2.60-bugs.debian.org_2005_01_02

Package: wnpp
Severity: wishlist
Owner: "Nelson A. de Oliveira" <naoliv@biolinux.df.ibilce.unesp.br>

* Package name    : sim4
  Version         : 2003.09.21
  Upstream Author : Liliana Florea <florea@gwu.edu>
* URL             : http://www.bx.psu.edu/miller_lab/
* License         : GPL
  Description     : tool for aligning cDNA and genomic DNA [med-bio]

 sim4 is a similarity-based tool for aligning an expressed DNA sequence
 (EST, cDNA, mRNA) with a genomic sequence for the gene. It also detects
 end matches when the two input sequences overlap at one end (i.e., the
 start of one sequence overlaps the end of the other).

-- System Information:
Debian Release: testing/unstable
  APT prefers unstable
  APT policy: (990, 'unstable'), (500, 'testing'), (1, 'experimental')
Architecture: i386 (i686)
Shell:  /bin/sh linked to /bin/bash
Kernel: Linux 2.6.12-rc6-mm1
Locale: LANG=pt_BR, LC_CTYPE=pt_BR (charmap=ISO-8859-1) (ignored: LC_ALL set to pt_BR)

Received: (at 321180-close) by bugs.debian.org; 7 Aug 2005 14:39:18 +0000
>From joerg@spohr.debian.org Sun Aug 07 07:39:18 2005
Return-path: <joerg@spohr.debian.org>
Received: from joerg by spohr.debian.org with local (Exim 3.36 1 (Debian))
	id 1E1mGF-0003Kp-00; Sun, 07 Aug 2005 07:36:23 -0700
From: naoliv@gmail.com (Nelson A. de Oliveira)
To: 321180-close@bugs.debian.org
X-Katie: lisa $Revision: 1.30 $
Subject: Bug#321180: fixed in sim4 0.0.20030921-1
Message-Id: <E1E1mGF-0003Kp-00@spohr.debian.org>
Sender: Joerg Jaspert <joerg@spohr.debian.org>
Date: Sun, 07 Aug 2005 07:36:23 -0700
Delivered-To: 321180-close@bugs.debian.org
X-Spam-Checker-Version: SpamAssassin 2.60-bugs.debian.org_2005_01_02 
	(1.212-2003-09-23-exp) on spohr.debian.org
X-Spam-Status: No, hits=-6.0 required=4.0 tests=BAYES_00,HAS_BUG_NUMBER 
	autolearn=no version=2.60-bugs.debian.org_2005_01_02

Source: sim4
Source-Version: 0.0.20030921-1

We believe that the bug you reported is fixed in the latest version of
sim4, which is due to be installed in the Debian FTP archive:

  to pool/main/s/sim4/sim4_0.0.20030921-1.diff.gz
  to pool/main/s/sim4/sim4_0.0.20030921-1.dsc
  to pool/main/s/sim4/sim4_0.0.20030921-1_i386.deb
  to pool/main/s/sim4/sim4_0.0.20030921.orig.tar.gz

A summary of the changes between this version and the previous one is

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 321180@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
Nelson A. de Oliveira <naoliv@gmail.com> (supplier of updated sim4 package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)

Hash: SHA1

Format: 1.7
Date: Wed,  3 Aug 2005 18:21:06 -0300
Source: sim4
Binary: sim4
Architecture: source i386
Version: 0.0.20030921-1
Distribution: unstable
Urgency: low
Maintainer: Nelson A. de Oliveira <naoliv@gmail.com>
Changed-By: Nelson A. de Oliveira <naoliv@gmail.com>
 sim4       - tool for aligning cDNA and genomic DNA
Closes: 321180
 sim4 (0.0.20030921-1) unstable; urgency=low
   * Initial release. (Closes: #321180)
 dfdc829098f624efa86ac50b83bab1b9 612 science optional sim4_0.0.20030921-1.dsc
 7062ed6e5b5c9a327213c0f9cae7a90a 60814 science optional sim4_0.0.20030921.orig.tar.gz
 eac710db45ef60cf7a0125c1f8a1088c 4773 science optional sim4_0.0.20030921-1.diff.gz
 23be3b74566e40cc5ffa2b11bf11812a 47118 science optional sim4_0.0.20030921-1_i386.deb

Version: GnuPG v1.4.1 (GNU/Linux)


Reply to: