Bug#321180: marked as done (ITP: sim4 -- tool for aligning cDNA and genomic DNA [med-bio])
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From: "Nelson A. de Oliveira" <naoliv@biolinux.df.ibilce.unesp.br>
To: Debian Bug Tracking System <submit@bugs.debian.org>
Subject: ITP: sim4 -- tool for aligning cDNA and genomic DNA [med-bio]
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Package: wnpp
Severity: wishlist
Owner: "Nelson A. de Oliveira" <naoliv@biolinux.df.ibilce.unesp.br>
* Package name : sim4
Version : 2003.09.21
Upstream Author : Liliana Florea <florea@gwu.edu>
* URL : http://www.bx.psu.edu/miller_lab/
* License : GPL
Description : tool for aligning cDNA and genomic DNA [med-bio]
sim4 is a similarity-based tool for aligning an expressed DNA sequence
(EST, cDNA, mRNA) with a genomic sequence for the gene. It also detects
end matches when the two input sequences overlap at one end (i.e., the
start of one sequence overlaps the end of the other).
-- System Information:
Debian Release: testing/unstable
APT prefers unstable
APT policy: (990, 'unstable'), (500, 'testing'), (1, 'experimental')
Architecture: i386 (i686)
Shell: /bin/sh linked to /bin/bash
Kernel: Linux 2.6.12-rc6-mm1
Locale: LANG=pt_BR, LC_CTYPE=pt_BR (charmap=ISO-8859-1) (ignored: LC_ALL set to pt_BR)
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From: naoliv@gmail.com (Nelson A. de Oliveira)
To: 321180-close@bugs.debian.org
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Subject: Bug#321180: fixed in sim4 0.0.20030921-1
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Source: sim4
Source-Version: 0.0.20030921-1
We believe that the bug you reported is fixed in the latest version of
sim4, which is due to be installed in the Debian FTP archive:
sim4_0.0.20030921-1.diff.gz
to pool/main/s/sim4/sim4_0.0.20030921-1.diff.gz
sim4_0.0.20030921-1.dsc
to pool/main/s/sim4/sim4_0.0.20030921-1.dsc
sim4_0.0.20030921-1_i386.deb
to pool/main/s/sim4/sim4_0.0.20030921-1_i386.deb
sim4_0.0.20030921.orig.tar.gz
to pool/main/s/sim4/sim4_0.0.20030921.orig.tar.gz
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 321180@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Nelson A. de Oliveira <naoliv@gmail.com> (supplier of updated sim4 package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA1
Format: 1.7
Date: Wed, 3 Aug 2005 18:21:06 -0300
Source: sim4
Binary: sim4
Architecture: source i386
Version: 0.0.20030921-1
Distribution: unstable
Urgency: low
Maintainer: Nelson A. de Oliveira <naoliv@gmail.com>
Changed-By: Nelson A. de Oliveira <naoliv@gmail.com>
Description:
sim4 - tool for aligning cDNA and genomic DNA
Closes: 321180
Changes:
sim4 (0.0.20030921-1) unstable; urgency=low
.
* Initial release. (Closes: #321180)
Files:
dfdc829098f624efa86ac50b83bab1b9 612 science optional sim4_0.0.20030921-1.dsc
7062ed6e5b5c9a327213c0f9cae7a90a 60814 science optional sim4_0.0.20030921.orig.tar.gz
eac710db45ef60cf7a0125c1f8a1088c 4773 science optional sim4_0.0.20030921-1.diff.gz
23be3b74566e40cc5ffa2b11bf11812a 47118 science optional sim4_0.0.20030921-1_i386.deb
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