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Re: IndexError: list index out of range



so it's a ATI driver issue.

I tried on the desktop with Nivida driver (wheezy AMD64) it shows no
problem but I gotta wait for 10 mins or more to start this program. it
showed me lists of warnings at the end:

P.S The long warning list:

Warning (from warnings module):
  File "/usr/lib/python2.6/dist-packages/DejaVu/Clip.py", line 98
    self.Ri = glCleanRotMat(self.Ri)
DeprecationWarning: PyArray_FromDims: use PyArray_SimpleNew.
>>>
Warning (from warnings module):
  File "/usr/lib/python2.6/dist-packages/DejaVu/Clip.py", line 98
    self.Ri = glCleanRotMat(self.Ri)
DeprecationWarning: PyArray_FromDimsAndDataAndDescr: use PyArray_NewFromDescr.
>>>
Warning (from warnings module):
  File "/usr/lib/python2.6/dist-packages/DejaVu/Transformable.py", line 411
    self.Ri = glCleanRotMat(self.Ri).astype('f')
DeprecationWarning: PyArray_FromDims: use PyArray_SimpleNew.
>>>
Warning (from warnings module):
  File "/usr/lib/python2.6/dist-packages/DejaVu/Transformable.py", line 411
    self.Ri = glCleanRotMat(self.Ri).astype('f')
DeprecationWarning: PyArray_FromDimsAndDataAndDescr: use PyArray_NewFromDescr.
>>>
Warning (from warnings module):
  File "/usr/lib/python2.6/dist-packages/geomutils/geomalgorithms.py", line 102
    return triangleNormalsPerVertex(vertices, triangles)
DeprecationWarning: PyArray_FromDimsAndDataAndDescr: use PyArray_NewFromDescr.
>>>
Warning (from warnings module):
  File "/usr/lib/python2.6/dist-packages/geomutils/geomalgorithms.py", line 100
    return triangleNormalsPerFace(vertices, triangles)
DeprecationWarning: PyArray_FromDimsAndDataAndDescr: use PyArray_NewFromDescr.
>>>
Warning (from warnings module):
  File "/usr/lib/python2.6/dist-packages/AutoDockTools/autoanalyzeCommands.py",
line 75
    import types, Tkinter, commands, os, copy, glob, popen2, time
DeprecationWarning: The popen2 module is deprecated.  Use the subprocess module.
>>>
Warning (from warnings module):
  File "/usr/lib/python2.6/dist-packages/bhtree/bhtreelib.py", line 167
    def closePointsPairsInTree(self, *args): return
_bhtreelib.BHtree_closePointsPairsInTree(self, *args)
DeprecationWarning: PyArray_FromDims: use PyArray_SimpleNew.
>>>
Warning (from warnings module):
  File "/usr/lib/python2.6/dist-packages/bhtree/bhtreelib.py", line 167
    def closePointsPairsInTree(self, *args): return
_bhtreelib.BHtree_closePointsPairsInTree(self, *args)
DeprecationWarning: PyArray_FromDimsAndDataAndDescr: use PyArray_NewFromDescr.
>>>
Warning (from warnings module):
  File "/usr/lib/python2.6/dist-packages/DejaVu/Transformable.py", line 102
    rot = glCleanRotMat(rot.ravel())
DeprecationWarning: PyArray_FromDims: use PyArray_SimpleNew.
>>>
Warning (from warnings module):
  File "/usr/lib/python2.6/dist-packages/DejaVu/Transformable.py", line 102
    rot = glCleanRotMat(rot.ravel())
DeprecationWarning: PyArray_FromDimsAndDataAndDescr: use PyArray_NewFromDescr.
>>>
Warning (from warnings module):
  File "/usr/lib/python2.6/dist-packages/DejaVu/Trackball.py", line 177
    self.B1motion(event, self.tb.mat, self.vectorXY, self.vectorZ)
DeprecationWarning: PyArray_FromDims: use PyArray_SimpleNew.
>>>
Warning (from warnings module):
  File "/usr/lib/python2.6/dist-packages/DejaVu/Trackball.py", line 177
    self.B1motion(event, self.tb.mat, self.vectorXY, self.vectorZ)
DeprecationWarning: PyArray_FromDimsAndDataAndDescr: use PyArray_NewFromDescr.
>>>
Warning (from warnings module):
  File "/usr/lib/python2.6/dist-packages/DejaVu/glfLabels.py", line 411
    rot = glCleanRotMat(m) #much faster than self.Decompose4x4(m)
DeprecationWarning: PyArray_FromDims: use PyArray_SimpleNew.
>>>
Warning (from warnings module):
  File "/usr/lib/python2.6/dist-packages/DejaVu/glfLabels.py", line 411
    rot = glCleanRotMat(m) #much faster than self.Decompose4x4(m)
DeprecationWarning: PyArray_FromDimsAndDataAndDescr: use PyArray_NewFromDescr.


On Fri, May 27, 2011 at 10:12 PM, Camaleón <noelamac@gmail.com> wrote:
> On Fri, 27 May 2011 21:41:10 +0800, lina wrote:
>
>> On Fri, May 27, 2011 at 9:16 PM, Camaleón <noelamac@gmail.com> wrote:
>>> On Fri, 27 May 2011 16:28:37 +0800, lina wrote:
>>>
>>>> when I tried AutoDockTools, which showed me something like
>>>>
>>>> IndexError: list index out of range
>>>>
>>>> Is it something relevant to driver or Pmv or ?
>>>
>>> (...)
>>>
>>> Take a look into this thread:
>>>
>>> PMV or ADT stopped working on vista and debian
>>> http://mgl.scripps.edu/forum/viewtopic.php?f=11&t=584
>
> (...)
>
>> I tried the above advice before, it shows:
>
> (...)
>
>>  File "/usr/lib/python2.6/dist-packages/DejaVu/Viewer.py", line 602, in
>>  Viewer
>>    if(maxClipP > 6):
>> NameError: name 'maxClipP' is not defined hit enter to continue
>>
>> I don't know how to fix it.
>
> Hum... it is also reported in Debian BTS:
>
> runPmv crashes on start with index out of range for self.clipPlaneNames
> [num] in .../DejaVu/Clip.py
> http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=603022
>
> Greetings,
>
> --
> Camaleón
>
>
> --
> To UNSUBSCRIBE, email to debian-user-REQUEST@lists.debian.org
> with a subject of "unsubscribe". Trouble? Contact listmaster@lists.debian.org
> Archive: [🔎] pan.2011.05.27.14.12.37@gmail.com">http://lists.debian.org/[🔎] pan.2011.05.27.14.12.37@gmail.com
>
>



-- 
Best Regards,

lina


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