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Re: Bug#1116861: python-h5netcdf: FTBFS with the nocheck build profile



> Hello.

> I've pushed a fix for this one, but I believe the autopkgtests will
> not work, so not making any upload. If you could look at it, it would
> be great:

> https://salsa.debian.org/science-team/python-h5netcdf/-/pipelines

> Thanks.


Hi Santiago, 

I'm the maintainer of python-hepunits and the bug in python-h5netcdf affects python-hepunits and is marked for removal from testing due to this bug.

I've tried building h5netcdf to have a look at the autopkgtest failures and it seems like the doc package, python-h5netcdf-doc seems to be downgrading during the autopkgtests, could this be the reason why the autopkgtests fail? I'm attaching the full error log below.

I'm CC'ing the science team if anybody can help me fix this bug and see if there's a possibility for a NMU.

Link to the bug:  https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1116861

Full Error Log:

tests/test_h5netcdf.py::test_compoundtype_creation[testfile.nc-h5netcdf.legacyapi] PASSED [ 92%]
tests/test_h5netcdf.py::test_compoundtype_creation[hdf5://testfile-netCDF4] SKIPPED [ 93%]
tests/test_h5netcdf.py::test_compoundtype_creation[hdf5://testfile-h5netcdf.legacyapi] SKIPPED [ 93%]
tests/test_h5netcdf.py::test_nc_complex_compatibility[testfile.nc-netCDF4] PASSED [ 94%]
tests/test_h5netcdf.py::test_nc_complex_compatibility[testfile.nc-h5netcdf.legacyapi] PASSED [ 95%]
tests/test_h5netcdf.py::test_nc_complex_compatibility[hdf5://testfile-netCDF4] SKIPPED [ 95%]
tests/test_h5netcdf.py::test_nc_complex_compatibility[hdf5://testfile-h5netcdf.legacyapi] SKIPPED [ 96%]
tests/test_h5netcdf.py::test_complex_type_creation_errors PASSED         [ 96%]
tests/test_h5netcdf.py::test_hsds SKIPPED (Required packages h5pyd a...) [ 97%]
tests/test_h5netcdf.py::test_h5pyd_driver SKIPPED (Required packages...) [ 98%]
tests/test_h5netcdf.py::test_h5pyd_nonchunked_scalars SKIPPED (Requi...) [ 98%]
tests/test_h5netcdf.py::test_h5pyd_append SKIPPED (Required packages...) [ 99%]
tests/test_h5netcdf.py::test_raise_on_closed_file PASSED                 [100%]

================ 104 passed, 56 skipped, 1 deselected in 4.77s =================
autopkgtest [21:11:20]: test command1: -----------------------]
autopkgtest [21:11:21]: test command1:  - - - - - - - - - - results - - - - - - - - - -
command1             PASS
autopkgtest [21:11:21]: test command2: preparing testbed
Ign:1 file:/tmp/autopkgtest.HXRk8f/binaries  InRelease
Get:2 file:/tmp/autopkgtest.HXRk8f/binaries  Release [816 B]
Get:2 file:/tmp/autopkgtest.HXRk8f/binaries  Release [816 B]
Ign:3 file:/tmp/autopkgtest.HXRk8f/binaries  Release.gpg
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Starting pkgProblemResolver with broken count: 0
Starting 2 pkgProblemResolver with broken count: 0
Done
The following packages will be DOWNGRADED:
  python-h5netcdf-doc
0 upgraded, 0 newly installed, 1 reinstalled, 1 downgraded, 0 to remove and 64 not upgraded.
Need to get 0 B/117 kB of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/tmp/autopkgtest.HXRk8f/binaries  python-h5netcdf-doc 1.6.4-1 [65.8 kB]
(Reading database ... 15967 files and directories currently installed.)
Preparing to unpack ..././python-h5netcdf-doc.deb ...
Unpacking python-h5netcdf-doc (1.6.4-1) over (1.6.4-1) ...
Preparing to unpack .../python3-h5netcdf_1.6.4-1_all.deb ...
Unpacking python3-h5netcdf (1.6.4-1) over (1.6.4-1) ...
Setting up python-h5netcdf-doc (1.6.4-1) ...
Setting up python3-h5netcdf (1.6.4-1) ...
W: --force-yes is deprecated, use one of the options starting with --allow instead.
Reading package lists...
Building dependency tree...
Reading state information...
Starting pkgProblemResolver with broken count: 0
Starting 2 pkgProblemResolver with broken count: 0
Done
The following packages will be DOWNGRADED:
  python-h5netcdf-doc
0 upgraded, 0 newly installed, 1 downgraded, 0 to remove and 64 not upgraded.
E: Packages were downgraded and -y was used without --allow-downgrades.
E: Failed to process build dependencies
command2             FAIL badpkg
blame: arg:/home/aryan/Documents/Debian Stuff/bugs/python-h5netcdf-doc_1.6.4-1_all.deb deb:python-h5netcdf-doc arg:/home/aryan/Documents/Debian Stuff/bugs/python3-h5netcdf_1.6.4-1_all.deb deb:python3-h5netcdf /home/aryan/Documents/Debian Stuff/bugs/python-h5netcdf_1.6.4-1.dsc
badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U.
autopkgtest [21:11:26]: @@@@@@@@@@@@@@@@@@@@ summary
command1             PASS
command2             FAIL badpkg
blame: arg:/home/aryan/Documents/Debian Stuff/bugs/python-h5netcdf-doc_1.6.4-1_all.deb deb:python-h5netcdf-doc arg:/home/aryan/Documents/Debian Stuff/bugs/python3-h5netcdf_1.6.4-1_all.deb deb:python3-h5netcdf /home/aryan/Documents/Debian Stuff/bugs/python-h5netcdf_1.6.4-1.dsc
badpkg: Test dependencies are unsatisfiable. A common reason is that your testbed is out of date with respect to the archive, and you need to use a current testbed or run apt-get update or use -U.

E: Autopkgtest run failed.

+------------------------------------------------------------------------------+
| Cleanup                                      Sun, 19 Oct 2025 15:41:27 +0000 |
+------------------------------------------------------------------------------+

Purging /build/reproducible-path
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                      Sun, 19 Oct 2025 15:41:29 +0000 |
+------------------------------------------------------------------------------+

Autopkgtest: fail
Build Architecture: amd64
Build Type: full
Build-Space: 4280
Build-Time: 19
Distribution: unstable
Host Architecture: amd64
Install-Time: 86
Job: /home/aryan/Documents/Debian Stuff/bugs/python-h5netcdf_1.6.4-1.dsc
Lintian: info
Machine Architecture: amd64
Package: python-h5netcdf
Package-Time: 404
Source-Version: 1.6.4-1
Space: 4280
Status: successful
Version: 1.6.4-1
--------------------------------------------------------------------------------
Finished at 2025-10-19T15:39:29Z
Build needed 00:06:44, 4280k disk space

-- 
Regards,

Aryan Karamtoth
IRC: SpaciousCoder78
Matrix: @SpaciousCoder78:matrix.org
XMPP: SpaciousCoder78@xmpp.earth

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