Help for build-time test failure of libhmsbeagle (phylogeny algorithms using GPU) needed
Hi,
I'm trying to update libhmsbeagle[1] to its latest upstream version.
Unfortunately I'm running into a build time test where I have no idea
how to deal with:
...
make[4]: Entering directory '/build/libhmsbeagle-3.0.2+dfsg/examples/matrixtest' -
make matrixtest
make[5]: Entering directory '/build/libhmsbeagle-3.0.2+dfsg/examples/matrixtest'
g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-10-openjdk-amd64/include -I/usr/lib/jvm/java-10-openjdk-amd64/include/linux -O3 -std=c++11 -pthread -g -O2 -fdebug-prefix-map=/build/libhmsbeagle-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o matrixtest.o matrixtest.cpp
/bin/bash ../../libtool --tag=CXX --mode=link g++ -O3 -std=c++11 -pthread -g -O2 -fdebug-prefix-map=/build/libhmsbeagle-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o matrixtest matrixtest.o ../../libhmsbeagle/libhmsbeagle.la -ldl
libtool: link: g++ -O3 -std=c++11 -pthread -g -O2 -fdebug-prefix-map=/build/libhmsbeagle-3.0.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/matrixtest matrixtest.o ../../libhmsbeagle/.libs/libhmsbeagle.so -ldl -pthread
make[5]: Leaving directory '/build/libhmsbeagle-3.0.2+dfsg/examples/matrixtest' e
make check-TESTS -
make[5]: Entering directory '/build/libhmsbeagle-3.0.2+dfsg/examples/matrixtest'
make[6]: Entering directory '/build/libhmsbeagle-3.0.2+dfsg/examples/matrixtest' md
FAIL: matrixtest -
============================================================
libhmsbeagle 3.0.2: examples/matrixtest/test-suite.log
============================================================
# TOTAL: 1
# PASS: 0
# SKIP: 0
# XFAIL: 0
# FAIL: 1
# XPASS: 0
# ERROR: 0
.. contents:: :depth: 2
FAIL: matrixtest
================
OpenCL error: CL_INVALID_VALUE from file <GPUInterfaceOpenCL.cpp>, line 923.
Using resource 1:
Rsrc Name : pthread-Intel(R) Core(TM) i5-4200U CPU @ 1.60GHz (OpenCL 1.2 pocl HSTR: pthread-x86_64-pc-linux-gnu-haswell)
Impl : OpenCL-Single
Impl Desc : none
FAIL matrixtest (exit status: 255)
Before I contact upstream I wonder whether I might have missed some GPU
specific things that might help here.
Kind regards
Andreas.
[1] https://salsa.debian.org/med-team/libhmsbeagle
--
http://fam-tille.de
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