Your message dated Mon, 09 Nov 2015 12:00:23 +0000 with message-id <E1Zvl7X-0007c1-Rl@franck.debian.org> and subject line Bug#800489: fixed in ruby-fix-trinity-output 1.0.0-1 has caused the Debian Bug report #800489, regarding ITP: ruby-fix-trinity-output -- Fix output fastq files from trinityrnaseq to be marked as done. This means that you claim that the problem has been dealt with. If this is not the case it is now your responsibility to reopen the Bug report if necessary, and/or fix the problem forthwith. (NB: If you are a system administrator and have no idea what this message is talking about, this may indicate a serious mail system misconfiguration somewhere. Please contact owner@bugs.debian.org immediately.) -- 800489: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=800489 Debian Bug Tracking System Contact owner@bugs.debian.org with problems
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- To: Debian Bug Tracking System <submit@bugs.debian.org>
- Subject: ITP: ruby-fix-trinity-output -- Fix output fastq files from trinityrnaseq
- From: Michael Crusoe <michael.crusoe@gmail.com>
- Date: Wed, 30 Sep 2015 05:11:13 +0000
- Message-id: <CAD=WrcJWeW7WN-ZDMhYsFaGbrbEdEn0NyTycvC1dP6Lnr+UMFQ@mail.gmail.com>
Package: wnppOwner: "Debian Ruby Team" <debian-ruby@lists.debian.org>Severity: wishlistX-Debbugs-CC: debian-ruby@lists.debian.org* Package name : ruby-fix-trinity-outputVersion : 1.0.0Upstream Author : Chris Boursnell <cmb211@cam.ac.uk>* License : MITProgramming Lang: RubyDescription : Fix output fastq files from trinityrnaseqtrinityrnaseq outputs fastq files that have been 'corrected'Unfortunately these files are no longer properly paired and therefore can't be used in most aligners such as bowtie2 and snap-aligner. This script attempts to fix that and produce 2 properly paired fastq files and a fastq file containing single readsThis package is a dependency for 'transrate'.This package will be maintained as part of the Debian Ruby packaging team.
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--- Begin Message ---
- To: 800489-close@bugs.debian.org
- Subject: Bug#800489: fixed in ruby-fix-trinity-output 1.0.0-1
- From: crusoe@ucdavis.edu (Michael R. Crusoe)
- Date: Mon, 09 Nov 2015 12:00:23 +0000
- Message-id: <E1Zvl7X-0007c1-Rl@franck.debian.org>
Source: ruby-fix-trinity-output Source-Version: 1.0.0-1 We believe that the bug you reported is fixed in the latest version of ruby-fix-trinity-output, which is due to be installed in the Debian FTP archive. A summary of the changes between this version and the previous one is attached. Thank you for reporting the bug, which will now be closed. If you have further comments please address them to 800489@bugs.debian.org, and the maintainer will reopen the bug report if appropriate. Debian distribution maintenance software pp. Michael R. Crusoe <crusoe@ucdavis.edu> (supplier of updated ruby-fix-trinity-output package) (This message was generated automatically at their request; if you believe that there is a problem with it please contact the archive administrators by mailing ftpmaster@ftp-master.debian.org) -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 1.8 Date: Sat, 19 Sep 2015 22:00:01 -0700 Source: ruby-fix-trinity-output Binary: ruby-fix-trinity-output Architecture: source all Version: 1.0.0-1 Distribution: unstable Urgency: medium Maintainer: Debian Ruby Extras Maintainers <pkg-ruby-extras-maintainers@lists.alioth.debian.org> Changed-By: Michael R. Crusoe <crusoe@ucdavis.edu> Description: ruby-fix-trinity-output - Fix output fastq files from trinityrnaseq Closes: 800489 Changes: ruby-fix-trinity-output (1.0.0-1) unstable; urgency=medium . * Initial release (Closes: #800489) Checksums-Sha1: 36a19fd3c306bb297250b1e9f6eb8694ac329ad6 2223 ruby-fix-trinity-output_1.0.0-1.dsc aa1993dc5f2b9ec0f376437ce0ef4ee4b76fe150 33583 ruby-fix-trinity-output_1.0.0.orig.tar.gz 5aa0f30d55321467b958c183a60dd88d0e7b37b3 2696 ruby-fix-trinity-output_1.0.0-1.debian.tar.xz 585a1b33d5cbe7d824dda09086714dae02a3b12e 4734 ruby-fix-trinity-output_1.0.0-1_all.deb Checksums-Sha256: 168ba32bf74c50312d73cc8b042e23beea3c533b35c904ebe8d30a4462c7906a 2223 ruby-fix-trinity-output_1.0.0-1.dsc ec04fea62f742e6ebacaeae47c0911b8ed61a9d757be42e894577ab4cfc9c900 33583 ruby-fix-trinity-output_1.0.0.orig.tar.gz d9a8ae6aea54c3ea59f1887ce3a082da7ca4281dd8ff559203203b587a98857f 2696 ruby-fix-trinity-output_1.0.0-1.debian.tar.xz 9a6da7d1e104089e19df5e4813d7467a89adb618844625b581fb5a2b8e42f9af 4734 ruby-fix-trinity-output_1.0.0-1_all.deb Files: 667ed757584536d6eb63279eb964bae2 2223 ruby optional ruby-fix-trinity-output_1.0.0-1.dsc cf0a3c26e56f4828483e7b0560d5f358 33583 ruby optional ruby-fix-trinity-output_1.0.0.orig.tar.gz 708a3d7e1edaa60711cb87b3a24c63a3 2696 ruby optional ruby-fix-trinity-output_1.0.0-1.debian.tar.xz 0ba9f29840214ce02ba379deae85cf68 4734 ruby optional ruby-fix-trinity-output_1.0.0-1_all.deb -----BEGIN PGP SIGNATURE----- Version: GnuPG v1 iQIcBAEBCgAGBQJWPlzrAAoJELGIrlV59JL4ut4P/1iDTNE4s2S91NGXEU/88SYU i7MJVRlmNlLRZnyjPJbGJM2eMcepcFNcSMHBTV9+NnwHmSqHooD6YvxvQ+4FbNW/ ePB/rUOg9aNaMVRQQPqtMp4JcX8X9XpuozMpui7qxjV15yeaLw4KVLpM9+Mr6g9c Td6ywWCGv19Z1+MN7elP2lZwA2T5mP9KDc2OLiJxyUcn+ZfN9o5dR70wB1AOz5g/ lyPT1cWm9SIdP5V0g9ZTNvF9zmr8goaqRmCQ/odj14yAmgSBxTqN/dh3+BI4P9Ou WKGK6GLPbTzu3w8pENG70wDu2girKIY/fhniRBLiqtyUhnk1HfP+4i6vTCfqwHjq B+hntl8cSo7dIMB9TDHXaoJdyO7zIF3NKfbjfSHS9e8FbJoUbA2WFJr0ia5Jreyg qXfv+1nBd77b1qYXr9Y+Df/g5gs0PNTrdeVPfZRTCmA5dWP0Ijoqx09/hQ9fO2x8 x064XzqtdNr+wy5bZtLHlV2c4dVBMn0JX4UO5b02vFVi2xXBk19nOi3w7j0eDecZ b/vq/rMTpDzjnxOWPDaW+ndcJVC9DLj83d8raxfJua9BXyI4DEQmwYM4QrVlxn+R iaLMphJH6UOj55MXB6Qsp39w5iNZMumD4R7pKx0MjHYGejxMbJaMMsDXswMIH2Ch KEaL/EPSmE5y80lmGbAL =iPy3 -----END PGP SIGNATURE-----
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