Re: Bug#1103579: coot: autopkgtest regression: ImportError

[Chris Hofstaedtler <zeha@debian.org>]

* Andrius Merkys <merkys@debian.org> [250422 09:27]:
> Hi,
>
> On 2025-04-19 14:09, Chris Hofstaedtler wrote:
> > coot's autopkgtests fail with rdkit 202503.1-2:
> >
> > https://ci.debian.net/packages/c/coot/testing/amd64/60162582/
> >
> >  76s Traceback (most recent call last):
> >  76s   File "<frozen runpy>", line 198, in _run_module_as_main
> >  76s   File "<frozen runpy>", line 88, in _run_code
> >  76s   File "/usr/lib/python3/dist-packages/coot/pyrogen.py", line 38,
> > in <module>
> >  76s     import pyrogen_swig as pysw # relies on above rdkit.Chem import
> >  AllChem (but ideally should not)
> >  76s     ^^^^^^^^^^^^^^^^^^^^^^^^^^^
> >  76s   File "/usr/lib/python3/dist-packages/coot/pyrogen_swig.py", line
> > 12, in <module>
> >  76s     import _pyrogen_swig
> >  76s ImportError:
> > /usr/lib/x86_64-linux-gnu/coot/libcoot-lidia-core.so.0: undefined
> > symbol: _ZN5RDKit6MolOps5addHsERKNS_5ROMolEbbPKSt6vectorIjSaIjEEb
>
> coot/1.1.15+dfsg-1+b1 (in unstable) was a rebuild against 
> rdkit/202503.1-2 (in unstable). coot/1.1.15+dfsg-1 (in testing) is 
> built to work with rdkit/202409.6-2 (in testing). Mixing versions from 
> stable and unstable results in autopkgtest failures. I do not know how 
> to do this, but coot+rdkit has to migrate to testing together.

My understanding is that, when you cannot mix stable and 
unstable/testing, packages need to declare proper dependencies. At 
the very least, please talk to -release in such cases (added to CC:).

Chris