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Bug#1040953: marked as done (bookworm-pu: package sra-sdk/3.0.3+dfsg-6~deb12u1)



Your message dated Sat, 22 Jul 2023 13:19:43 +0000
with message-id <E1qNCWN-005rti-NS@coccia.debian.org>
and subject line Released with 12.1
has caused the Debian Bug report #1040953,
regarding bookworm-pu: package sra-sdk/3.0.3+dfsg-6~deb12u1
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
1040953: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1040953
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message ---
Package: release.debian.org
Severity: normal
Tags: bookworm
User: release.debian.org@packages.debian.org
Usertags: pu
X-Debbugs-Cc: sra-sdk@packages.debian.org
Control: affects -1 + src:sra-sdk

[ Reason ]
Per #1039621, the new libngs-jni package accidentally wound up with
bad content (unexpanded variables in the key symlink's source *and*
target) that rendered it useless.

[ Impact ]
This package's reverse dependencies, from libngs-java on up, will be
broken unless libncbi-ngs-dev happens to be installed.

[ Tests ]
Various affected packages have autopkgtests, but they evidently missed
the relevant bug, having presumably wound up running with
libncbi-ngs-dev additionally installed.  (The tests did catch the
need for architecture restrictions that made it into bookworm, FWIW.)

[ Risks ]
Minimal -- trivial fix, working in testing and unstable with no
further changes from stable.

[ Checklist ]
  [*] *all* changes are documented in the d/changelog
  [v] I reviewed all changes and I approve them
  [v] attach debdiff against the package in (old)stable
  [v] the issue is verified as fixed in unstable

[ Changes ]
Tweak debian/rules to make the necessary substitutions in
libngs-java.links.in.

[ Other info ]
In reviewing the debdiff, I see that one of my teammates pushed a
debian/salsa-ci.yml update without a corresponding changelog note that
consequently slipped into -6 undocumented; what should I do about it
at this point?

I've held off on cleaning up a long-dangling symlink in a different
binary package (sra-toolkit, #1040391) but can readily throw that in
if you'd like.
diff -Nru sra-sdk-3.0.3+dfsg/debian/.gitignore sra-sdk-3.0.3+dfsg/debian/.gitignore
--- sra-sdk-3.0.3+dfsg/debian/.gitignore	2023-02-24 05:52:27.000000000 -0500
+++ sra-sdk-3.0.3+dfsg/debian/.gitignore	1969-12-31 19:00:00.000000000 -0500
@@ -1,16 +0,0 @@
-*.debhelper
-*.substvars
-.debhelper
-.javahelper_clean
-debhelper-build-stamp
-files
-lib*-dev
-lib*[0-9]
-libngs-java
-libngs-java-doc
-libngs-java-doc.doc-base.javadoc
-libngs-jni
-libngs-jni.links
-python3-ngs
-sra-toolkit
-tmp
diff -Nru sra-sdk-3.0.3+dfsg/debian/changelog sra-sdk-3.0.3+dfsg/debian/changelog
--- sra-sdk-3.0.3+dfsg/debian/changelog	2023-02-24 05:52:27.000000000 -0500
+++ sra-sdk-3.0.3+dfsg/debian/changelog	2023-07-12 22:20:14.000000000 -0400
@@ -1,3 +1,16 @@
+sra-sdk (3.0.3+dfsg-6~deb12u1) bookworm; urgency=medium
+
+  * Reupload to bookworm (stable).  (Closes: #10nnnnn).
+
+ -- Aaron M. Ucko <ucko@debian.org>  Wed, 12 Jul 2023 22:20:14 -0400
+
+sra-sdk (3.0.3+dfsg-6) unstable; urgency=high
+
+  * debian/rules: Expand $(DEB_HOST_MULTIARCH) in libngs-java.links.in.
+    (Closes: #1039621.)
+
+ -- Aaron M. Ucko <ucko@debian.org>  Tue, 27 Jun 2023 22:14:41 -0400
+
 sra-sdk (3.0.3+dfsg-5) unstable; urgency=medium
 
   * Limit libngs-java to those architectures where libs are available
diff -Nru sra-sdk-3.0.3+dfsg/debian/rules sra-sdk-3.0.3+dfsg/debian/rules
--- sra-sdk-3.0.3+dfsg/debian/rules	2023-02-24 05:52:27.000000000 -0500
+++ sra-sdk-3.0.3+dfsg/debian/rules	2023-07-12 22:19:10.000000000 -0400
@@ -152,7 +152,10 @@
 execute_before_dh_link:
 	# Putting the upstream version number (without the dfsg part) at the end of
 	# symlink source in the -jni package.
-	sed 's/\(#STRIPPED_UPSTREAM_VERSION#\)/\1$(DEB_VERSION_UPSTREAM)/; s/#STRIPPED_UPSTREAM_VERSION#\(.*\)+dfsg[0-9]*/\1/' debian/libngs-jni.links.in > debian/libngs-jni.links
+	sed -e 's/\(#STRIPPED_UPSTREAM_VERSION#\)/\1$(DEB_VERSION_UPSTREAM)/' \
+	    -e 's/#STRIPPED_UPSTREAM_VERSION#\(.*\)+dfsg[0-9]*/\1/' \
+	    -e 's/\$$[({]DEB_HOST_MULTIARCH[)}]/$(DEB_HOST_MULTIARCH)/g' \
+	    debian/libngs-jni.links.in > debian/libngs-jni.links
 
 # require network, not automatically run
 # use it when the pom file must be re-downloaded from maven repo
diff -Nru sra-sdk-3.0.3+dfsg/debian/salsa-ci.yml sra-sdk-3.0.3+dfsg/debian/salsa-ci.yml
--- sra-sdk-3.0.3+dfsg/debian/salsa-ci.yml	2023-02-24 05:52:27.000000000 -0500
+++ sra-sdk-3.0.3+dfsg/debian/salsa-ci.yml	2023-07-12 22:19:10.000000000 -0400
@@ -2,3 +2,7 @@
 include:
   - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/salsa-ci.yml
   - https://salsa.debian.org/salsa-ci-team/pipeline/raw/master/pipeline-jobs.yml
+
+variables:
+# Does not build on i386
+  SALSA_CI_DISABLE_BUILD_PACKAGE_I386: 1

--- End Message ---
--- Begin Message ---
Version: 12.1

The upload requested in this bug has been released as part of 12.1.

--- End Message ---

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