Bug#954654: transition: hdf5
On 4/24/20 6:52 AM, Sebastiaan Couwenberg wrote:
> On 4/22/20 11:16 AM, Sebastiaan Couwenberg wrote:
>> On 4/21/20 11:32 AM, Emilio Pozuelo Monfort wrote:
>>> On 09/04/2020 11:09, Emilio Pozuelo Monfort wrote:
>>>> On 09/04/2020 06:17, Sebastiaan Couwenberg wrote:
>>>>> On 4/6/20 12:54 PM, Emilio Pozuelo Monfort wrote:
>>>>>> hdf5 is currently blocked from migrating to testing on mpich due to #954244.
>>>>>
>>>>> mpich migrated to testing. hdf5 will need some help to migrate, not all
>>>>> bad rdeps will be autoremoved eventually.
>>>>
>>>> I couldn't really understand what was going on from the normal hint output:
>>>>
>>>> got: 37+0: a-1:a-0:a-15:a-0:i-20:m-0:m-0:p-0:s-1
>>>> * armel: cdo, code-saturne, code-saturne-include, harp, libadios-bin, libharp-dev, libharp10, libncarg-bin, libncarg-dev, libncarg0, ncl-ncarg, python3-adios, python3-cdo, python3-harp, python3-sfepy
>>>>
>>>>
>>>> Looking closely at those packages didn't give me any hint as to why they would
>>>> be uninstallable (not even on armel) so I added a full hint-type hint and did
>>>> a test run, and I got this:
>>>>
>>>> I: [2020-04-09T08:49:35+0000] - Removed 9 of 40 cruft item(s) after the changes
>>>> I: [2020-04-09T08:49:35+0000] - easy: 55+0: a-10:a-3:a-3:a-3:i-23:m-3:m-3:p-3:s-4
>>>> I: [2020-04-09T08:49:35+0000] - * amd64: cantor-backend-scilab, cdo, python3-cdo, ruby-hdfeos5, scilab, scilab-cli, scilab-full-bin, scilab-minimal-bin, scilab-test
>>>> I: [2020-04-09T08:49:35+0000] - * arm64: cdo, python3-cdo, ruby-hdfeos5
>>>> I: [2020-04-09T08:49:35+0000] - * armel: cdo, python3-cdo, ruby-hdfeos5
>>>> I: [2020-04-09T08:49:35+0000] - * armhf: cdo, python3-cdo, ruby-hdfeos5
>>>> I: [2020-04-09T08:49:35+0000] - * i386: cdo, python3-cdo, ruby-hdfeos5
>>>> I: [2020-04-09T08:49:35+0000] - * mips64el: cdo, python3-cdo, ruby-hdfeos5
>>>> I: [2020-04-09T08:49:35+0000] - * mipsel: cdo, python3-cdo, ruby-hdfeos5
>>>> I: [2020-04-09T08:49:35+0000] - * ppc64el: cdo, python3-cdo, ruby-hdfeos5
>>>> I: [2020-04-09T08:49:35+0000] - * s390x: cdo, python3-cdo, ruby-hdfeos5
>>>> I: [2020-04-09T08:49:35+0000] - FAILED
>>>>
>>>> Basically we could remove cdo, ruby-hdfeos5 (or wait for it to be a candidate
>>>> but I would remove it now to finish this) and scilab. Unfortunately after checking
>>>> with dak, I found that tasksel depends on meta-kde, which depends on cantor, which
>>>> depends on scilab, which means that scilab is going to need a fix for #955694 in
>>>> order for this transition to finish.
>>>
>>> scilab got fixed, and openmpi became a blocker but also migrated. Some other
>>> packages received uploads but after hinting them hdf5 was finally able to migrate.
>>
>> It looks like hdf5 didn't actually migrate:
>>
>> $ rmadison -s testing hdf5
>> hdf5 | 1.10.4+repack-11 | testing | source
>>
>> 1.10.6+repack-1 is only in unstable.
>>
>> britney_output/2020/20200421030001.txt.gz shows a bunch of packaged
>> involved in the transition as accepted, but also that the hint failed.
>>
>> britney_output/2020/20200421040001.txt.gz shows that hdf5 is not a valid
>> candidate (or it already migrated).
>
> Looking at the excuses for the affected packages, I think the following
> may need a tpu rebuild as well:
>
> * h5py (blocked by sphinx)
> * ncbi-vdb (unfixed RC bug #952623)
> * bitshuffle (blocked by h5py)
Thanks for the many hints and other work to get hdf5 to migrate. It
finally migrated today.
Kind Regards,
Bas
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