Bug#954654: transition: hdf5
On 4/22/20 11:16 AM, Sebastiaan Couwenberg wrote:
> On 4/21/20 11:32 AM, Emilio Pozuelo Monfort wrote:
>> On 09/04/2020 11:09, Emilio Pozuelo Monfort wrote:
>>> On 09/04/2020 06:17, Sebastiaan Couwenberg wrote:
>>>> On 4/6/20 12:54 PM, Emilio Pozuelo Monfort wrote:
>>>>> hdf5 is currently blocked from migrating to testing on mpich due to #954244.
>>>>
>>>> mpich migrated to testing. hdf5 will need some help to migrate, not all
>>>> bad rdeps will be autoremoved eventually.
>>>
>>> I couldn't really understand what was going on from the normal hint output:
>>>
>>> got: 37+0: a-1:a-0:a-15:a-0:i-20:m-0:m-0:p-0:s-1
>>> * armel: cdo, code-saturne, code-saturne-include, harp, libadios-bin, libharp-dev, libharp10, libncarg-bin, libncarg-dev, libncarg0, ncl-ncarg, python3-adios, python3-cdo, python3-harp, python3-sfepy
>>>
>>>
>>> Looking closely at those packages didn't give me any hint as to why they would
>>> be uninstallable (not even on armel) so I added a full hint-type hint and did
>>> a test run, and I got this:
>>>
>>> I: [2020-04-09T08:49:35+0000] - Removed 9 of 40 cruft item(s) after the changes
>>> I: [2020-04-09T08:49:35+0000] - easy: 55+0: a-10:a-3:a-3:a-3:i-23:m-3:m-3:p-3:s-4
>>> I: [2020-04-09T08:49:35+0000] - * amd64: cantor-backend-scilab, cdo, python3-cdo, ruby-hdfeos5, scilab, scilab-cli, scilab-full-bin, scilab-minimal-bin, scilab-test
>>> I: [2020-04-09T08:49:35+0000] - * arm64: cdo, python3-cdo, ruby-hdfeos5
>>> I: [2020-04-09T08:49:35+0000] - * armel: cdo, python3-cdo, ruby-hdfeos5
>>> I: [2020-04-09T08:49:35+0000] - * armhf: cdo, python3-cdo, ruby-hdfeos5
>>> I: [2020-04-09T08:49:35+0000] - * i386: cdo, python3-cdo, ruby-hdfeos5
>>> I: [2020-04-09T08:49:35+0000] - * mips64el: cdo, python3-cdo, ruby-hdfeos5
>>> I: [2020-04-09T08:49:35+0000] - * mipsel: cdo, python3-cdo, ruby-hdfeos5
>>> I: [2020-04-09T08:49:35+0000] - * ppc64el: cdo, python3-cdo, ruby-hdfeos5
>>> I: [2020-04-09T08:49:35+0000] - * s390x: cdo, python3-cdo, ruby-hdfeos5
>>> I: [2020-04-09T08:49:35+0000] - FAILED
>>>
>>> Basically we could remove cdo, ruby-hdfeos5 (or wait for it to be a candidate
>>> but I would remove it now to finish this) and scilab. Unfortunately after checking
>>> with dak, I found that tasksel depends on meta-kde, which depends on cantor, which
>>> depends on scilab, which means that scilab is going to need a fix for #955694 in
>>> order for this transition to finish.
>>
>> scilab got fixed, and openmpi became a blocker but also migrated. Some other
>> packages received uploads but after hinting them hdf5 was finally able to migrate.
>
> It looks like hdf5 didn't actually migrate:
>
> $ rmadison -s testing hdf5
> hdf5 | 1.10.4+repack-11 | testing | source
>
> 1.10.6+repack-1 is only in unstable.
>
> britney_output/2020/20200421030001.txt.gz shows a bunch of packaged
> involved in the transition as accepted, but also that the hint failed.
>
> britney_output/2020/20200421040001.txt.gz shows that hdf5 is not a valid
> candidate (or it already migrated).
Looking at the excuses for the affected packages, I think the following
may need a tpu rebuild as well:
* h5py (blocked by sphinx)
* ncbi-vdb (unfixed RC bug #952623)
* bitshuffle (blocked by h5py)
Kind Regards,
Bas
--
GPG Key ID: 4096R/6750F10AE88D4AF1
Fingerprint: 8182 DE41 7056 408D 6146 50D1 6750 F10A E88D 4AF1
Reply to: