Bug#868558: transition: r-api-3.4 [was Re: Bug#868558: nmu: multiple r-* packages]
On 29 September 2017 at 12:59, Dirk Eddelbuettel <edd@debian.org> wrote:
> On 29 September 2017 at 07:36, Graham Inggs wrote:
> | rgtk2 and rggobi now FTBFS on s390x, they also fail in a Buster chroot
> | on zelenka.debian.org so I don't believe it is a regression in R, but
> | the binaries will need to be removed.
>
> Can you share details? Those are big/old gtk packages. And when you mean
> binaries removed you mean for s390x only or for all?
I didn't keep the build log from zelenka, but you can view a build log
from Ubuntu [3] by following the 's390x' link.
I mean only the s390x binaries removed.
> | results [1][2] that started failing on 2017-09-24. Unfortunately,
> | r-cran-dplyr 0.5.0-1 has always failed its autopkgtests, so the
> | results aren't useful.
To be clear, the packages I mentioned all built against the new R, it
is only the autopkgtests that fail, and fixing them is not a
requirement for completing the transition in Debian. In fact, the
Debian autopkgtest results [1][2] I linked to previously only tell us
that the test dependencies became unsatisfiable when the transition
started. The test failures I'm seeing in Ubuntu [3][4], may or may
not appear in Debian once these packages become installable and the
tests can be run again.
I would greatly appreciate any hints on how to find the cause of them:
IRanges RUnit Tests - 91 test functions, 2 errors, 0 failures
ERROR in test_AtomicList_general: Error in match.arg(method) : 'arg'
must be of length 1
ERROR in test_AtomicList_numerical: Error in match.arg(method) : 'arg'
must be of length 1
VariantAnnotation RUnit Tests - 80 test functions, 1 error, 0 failures
ERROR in test_VRanges_vcf: Error in match.arg(method) : 'arg' must be
of length 1
> | [1] https://ci.debian.net/packages/r/r-bioc-iranges/unstable/amd64/
> | [2] https://ci.debian.net/packages/r/r-bioc-variantannotation/unstable/amd64/
[3] https://launchpad.net/ubuntu/+source/rgtk2/2.20.33-1build1
[4] https://objectstorage.prodstack4-5.canonical.com/v1/AUTH_77e2ada1e7a84929a74ba3b87153c0ac/autopkgtest-artful/artful/amd64/r/r-bioc-iranges/20170928_193643_fa35d@/log.gz
[5] https://objectstorage.prodstack4-5.canonical.com/v1/AUTH_77e2ada1e7a84929a74ba3b87153c0ac/autopkgtest-artful/artful/amd64/r/r-bioc-variantannotation/20170929_044514_9ee50@/log.gz
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