Re: Conflict between R 4.5 and some (mostly r-bioc 3.20) R packages
r-bioc-graph and r-bioc-iranges are both segfaults attempting to access
an empty object, and are known to upstream. (I'm not sure why they were
only exposed by R 4.5; they look like they're bugs independent of R
version.)
I have fixed versions of both in Salsa (r4p5test branches), using the
upstream fix for r-bioc-graph, but my own for r-bioc-iranges because the
upstream fix was a large rewrite that might not be allowed at this point
in the freeze.
As previously noted, it is likely (but untested) that the r-bioc-iranges
fix also fixes at least r-bioc-delayedmatrixstats, and maybe also
r-bioc-pwalign and r-bioc-shortread.
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