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Re: Conflict between R 4.5 and some (mostly r-bioc 3.20) R packages



r-bioc-graph and r-bioc-iranges are both segfaults attempting to access an empty object, and are known to upstream. (I'm not sure why they were only exposed by R 4.5; they look like they're bugs independent of R version.)

I have fixed versions of both in Salsa (r4p5test branches), using the upstream fix for r-bioc-graph, but my own for r-bioc-iranges because the upstream fix was a large rewrite that might not be allowed at this point in the freeze.

As previously noted, it is likely (but untested) that the r-bioc-iranges fix also fixes at least r-bioc-delayedmatrixstats, and maybe also r-bioc-pwalign and r-bioc-shortread.


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