Need Perl help for gff2aplot

[Andreas Tille <andreas@an3as.eu>]

Hi,

I added an autopkg test (seems right in time ;-) ) to gff2aplot[1].  I
think / hope I was able to fix some issues in the code.  The autopkgtest
also works with the locally installed package and than runing the test
script[3] (which basically fixes some scripts provided upstream and runs
these).  If you uncomment line 9 in the run-unit-test script[3] to make
sure the temporary dir remains you get some log files.  The file

   wublast/taf6.mmhs.genomic.blastn.aplot_conf.log

(and others but 'set -e' forces the script to stop) says:

   Can't use an undefined value as an ARRAY reference at /usr/bin/gff2aplot line 1737, <THIS> line 12.

This is refering to line 1736 in the original source[4] and
unfortunately my Perl knowledge is too poor to make some sensible
replacement for this.

I'd also love some critical view on my patch[2] if some volunteer is
kind enough to spent some time cycles on this issue.

Kind regards

      Andreas.


[1] https://salsa.debian.org/med-team/gff2aplot
[2] https://salsa.debian.org/med-team/gff2aplot/blob/master/debian/patches/perl_5.28.patch
[3] https://salsa.debian.org/med-team/gff2aplot/blob/master/debian/tests/run-unit-test
[4] https://salsa.debian.org/med-team/gff2aplot/blob/master/src/gff2aplot.pl

-- 
http://fam-tille.de