Hi all,
I sorted the release critical bug #1058394, originally affecting
augur, as it caused it to fail to build from source. The issue
was stemming from pyfastx, which needs rebuild so its library is
exposed to python3.12 scripts.
Have a nice day, :)
Étienne.
----- Forwarded message from Debian Bug Tracking System <owner@bugs.debian.org> -----
Date: Wed, 13 Dec 2023 10:51:02 +0000
From: Debian Bug Tracking System <owner@bugs.debian.org>
To: Étienne Mollier <emollier@debian.org>
Subject: Bug#1058394: marked as done (augur: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i
python{version} -p "3.12 3.11" returned exit code 13)
X-Mailer: MIME-tools 5.509 (Entity 5.509)
Your message dated Wed, 13 Dec 2023 10:49:07 +0000
with message-id <E1rDMnb-00BTJ2-67@fasolo.debian.org>
and subject line Bug#1058394: fixed in pyfastx 2.0.2-2
has caused the Debian Bug report #1058394,
regarding augur: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 3.11" returned exit code 13
to be marked as done.
This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.
(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)
--
1058394: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1058394
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
Date: Tue, 12 Dec 2023 09:17:52 +0100
From: Lucas Nussbaum <lucas@debian.org>
To: submit@bugs.debian.org
Subject: augur: FTBFS: dh_auto_test: error: pybuild --test --test-pytest -i
python{version} -p "3.12 3.11" returned exit code 13
Source: augur
Version: 23.1.1-1
Severity: serious
Justification: FTBFS
Tags: trixie sid ftbfs
User: lucas@debian.org
Usertags: ftbfs-20231212 ftbfs-trixie
Hi,
During a rebuild of all packages in sid, your package failed to build
on amd64.
Relevant part (hopefully):
> make[1]: Entering directory '/<<PKGBUILDDIR>>'
> cp -v mypy.ini /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build && cp -v mypy.ini /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build && :
> 'mypy.ini' -> '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/mypy.ini'
> 'mypy.ini' -> '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/mypy.ini'
> cp -v .flake8 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build && cp -v .flake8 /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build && :
> '.flake8' -> '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/.flake8'
> '.flake8' -> '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/.flake8'
> make[1]: Leaving directory '/<<PKGBUILDDIR>>'
> dh_auto_test -O--buildsystem=pybuild
> I: pybuild base:310: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build; python3.12 -m pytest tests
> ============================= test session starts ==============================
> platform linux -- Python 3.12.1, pytest-7.4.3, pluggy-1.3.0
> rootdir: /<<PKGBUILDDIR>>
> plugins: mock-3.12.0
> collected 12 items / 23 errors
>
> ==================================== ERRORS ====================================
> ______ ERROR collecting .pybuild/cpython3_3.12/build/tests/test_align.py _______
> ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/tests/test_align.py'.
> Hint: make sure your test modules/packages have valid Python names.
> Traceback:
> /usr/lib/python3.12/importlib/__init__.py:90: in import_module
> return _bootstrap._gcd_import(name[level:], package, level)
> tests/test_align.py:16: in <module>
> from augur import align
> augur/__init__.py:15: in <module>
> from .io.print import print_err
> augur/io/__init__.py:6: in <module>
> from .metadata import read_metadata # noqa: F401
> augur/io/metadata.py:5: in <module>
> import pyfastx
> E ModuleNotFoundError: No module named 'pyfastx'
> ______ ERROR collecting .pybuild/cpython3_3.12/build/tests/test_clades.py ______
> ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/tests/test_clades.py'.
> Hint: make sure your test modules/packages have valid Python names.
> Traceback:
> /usr/lib/python3.12/importlib/__init__.py:90: in import_module
> return _bootstrap._gcd_import(name[level:], package, level)
> tests/test_clades.py:4: in <module>
> from augur.clades import read_in_clade_definitions
> augur/__init__.py:15: in <module>
> from .io.print import print_err
> augur/io/__init__.py:6: in <module>
> from .metadata import read_metadata # noqa: F401
> augur/io/metadata.py:5: in <module>
> import pyfastx
> E ModuleNotFoundError: No module named 'pyfastx'
> ___ ERROR collecting .pybuild/cpython3_3.12/build/tests/test_frequencies.py ____
> ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/tests/test_frequencies.py'.
> Hint: make sure your test modules/packages have valid Python names.
> Traceback:
> /usr/lib/python3.12/importlib/__init__.py:90: in import_module
> return _bootstrap._gcd_import(name[level:], package, level)
> tests/test_frequencies.py:14: in <module>
> from augur.dates import numeric_date
> augur/__init__.py:15: in <module>
> from .io.print import print_err
> augur/io/__init__.py:6: in <module>
> from .metadata import read_metadata # noqa: F401
> augur/io/metadata.py:5: in <module>
> import pyfastx
> E ModuleNotFoundError: No module named 'pyfastx'
> _______ ERROR collecting .pybuild/cpython3_3.12/build/tests/test_mask.py _______
> ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/tests/test_mask.py'.
> Hint: make sure your test modules/packages have valid Python names.
> Traceback:
> /usr/lib/python3.12/importlib/__init__.py:90: in import_module
> return _bootstrap._gcd_import(name[level:], package, level)
> tests/test_mask.py:15: in <module>
> from augur import mask
> augur/__init__.py:15: in <module>
> from .io.print import print_err
> augur/io/__init__.py:6: in <module>
> from .metadata import read_metadata # noqa: F401
> augur/io/metadata.py:5: in <module>
> import pyfastx
> E ModuleNotFoundError: No module named 'pyfastx'
> ______ ERROR collecting .pybuild/cpython3_3.12/build/tests/test_parse.py _______
> ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/tests/test_parse.py'.
> Hint: make sure your test modules/packages have valid Python names.
> Traceback:
> /usr/lib/python3.12/importlib/__init__.py:90: in import_module
> return _bootstrap._gcd_import(name[level:], package, level)
> tests/test_parse.py:8: in <module>
> from augur import parse
> augur/__init__.py:15: in <module>
> from .io.print import print_err
> augur/io/__init__.py:6: in <module>
> from .metadata import read_metadata # noqa: F401
> augur/io/metadata.py:5: in <module>
> import pyfastx
> E ModuleNotFoundError: No module named 'pyfastx'
> ___ ERROR collecting .pybuild/cpython3_3.12/build/tests/test_titer_models.py ___
> ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/tests/test_titer_models.py'.
> Hint: make sure your test modules/packages have valid Python names.
> Traceback:
> /usr/lib/python3.12/importlib/__init__.py:90: in import_module
> return _bootstrap._gcd_import(name[level:], package, level)
> tests/test_titer_models.py:2: in <module>
> from augur.titer_model import TiterCollection
> augur/__init__.py:15: in <module>
> from .io.print import print_err
> augur/io/__init__.py:6: in <module>
> from .metadata import read_metadata # noqa: F401
> augur/io/metadata.py:5: in <module>
> import pyfastx
> E ModuleNotFoundError: No module named 'pyfastx'
> ____ ERROR collecting .pybuild/cpython3_3.12/build/tests/test_translate.py _____
> ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/tests/test_translate.py'.
> Hint: make sure your test modules/packages have valid Python names.
> Traceback:
> /usr/lib/python3.12/importlib/__init__.py:90: in import_module
> return _bootstrap._gcd_import(name[level:], package, level)
> tests/test_translate.py:13: in <module>
> from augur import translate
> augur/__init__.py:15: in <module>
> from .io.print import print_err
> augur/io/__init__.py:6: in <module>
> from .metadata import read_metadata # noqa: F401
> augur/io/metadata.py:5: in <module>
> import pyfastx
> E ModuleNotFoundError: No module named 'pyfastx'
> ______ ERROR collecting .pybuild/cpython3_3.12/build/tests/test_utils.py _______
> ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/tests/test_utils.py'.
> Hint: make sure your test modules/packages have valid Python names.
> Traceback:
> /usr/lib/python3.12/importlib/__init__.py:90: in import_module
> return _bootstrap._gcd_import(name[level:], package, level)
> tests/test_utils.py:9: in <module>
> from augur import utils
> augur/__init__.py:15: in <module>
> from .io.print import print_err
> augur/io/__init__.py:6: in <module>
> from .metadata import read_metadata # noqa: F401
> augur/io/metadata.py:5: in <module>
> import pyfastx
> E ModuleNotFoundError: No module named 'pyfastx'
> _____ ERROR collecting .pybuild/cpython3_3.12/build/tests/test_validate.py _____
> ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/tests/test_validate.py'.
> Hint: make sure your test modules/packages have valid Python names.
> Traceback:
> /usr/lib/python3.12/importlib/__init__.py:90: in import_module
> return _bootstrap._gcd_import(name[level:], package, level)
> tests/test_validate.py:4: in <module>
> from augur.validate import (
> augur/__init__.py:15: in <module>
> from .io.print import print_err
> augur/io/__init__.py:6: in <module>
> from .metadata import read_metadata # noqa: F401
> augur/io/metadata.py:5: in <module>
> import pyfastx
> E ModuleNotFoundError: No module named 'pyfastx'
> _ ERROR collecting .pybuild/cpython3_3.12/build/tests/test_validate_export.py __
> ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/tests/test_validate_export.py'.
> Hint: make sure your test modules/packages have valid Python names.
> Traceback:
> /usr/lib/python3.12/importlib/__init__.py:90: in import_module
> return _bootstrap._gcd_import(name[level:], package, level)
> tests/test_validate_export.py:10: in <module>
> from augur.export_v2 import convert_tree_to_json_structure
> augur/__init__.py:15: in <module>
> from .io.print import print_err
> augur/io/__init__.py:6: in <module>
> from .metadata import read_metadata # noqa: F401
> augur/io/metadata.py:5: in <module>
> import pyfastx
> E ModuleNotFoundError: No module named 'pyfastx'
> _ ERROR collecting .pybuild/cpython3_3.12/build/tests/dates/test_ambiguous_date.py _
> ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/tests/dates/test_ambiguous_date.py'.
> Hint: make sure your test modules/packages have valid Python names.
> Traceback:
> /usr/lib/python3.12/importlib/__init__.py:90: in import_module
> return _bootstrap._gcd_import(name[level:], package, level)
> tests/dates/test_ambiguous_date.py:3: in <module>
> from augur.dates import ambiguous_date
> augur/__init__.py:15: in <module>
> from .io.print import print_err
> augur/io/__init__.py:6: in <module>
> from .metadata import read_metadata # noqa: F401
> augur/io/metadata.py:5: in <module>
> import pyfastx
> E ModuleNotFoundError: No module named 'pyfastx'
> ___ ERROR collecting .pybuild/cpython3_3.12/build/tests/dates/test_dates.py ____
> ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/tests/dates/test_dates.py'.
> Hint: make sure your test modules/packages have valid Python names.
> Traceback:
> /usr/lib/python3.12/importlib/__init__.py:90: in import_module
> return _bootstrap._gcd_import(name[level:], package, level)
> tests/dates/test_dates.py:4: in <module>
> from augur import dates
> augur/__init__.py:15: in <module>
> from .io.print import print_err
> augur/io/__init__.py:6: in <module>
> from .metadata import read_metadata # noqa: F401
> augur/io/metadata.py:5: in <module>
> import pyfastx
> E ModuleNotFoundError: No module named 'pyfastx'
> _ ERROR collecting .pybuild/cpython3_3.12/build/tests/filter/test_relative_dates.py _
> ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/tests/filter/test_relative_dates.py'.
> Hint: make sure your test modules/packages have valid Python names.
> Traceback:
> /usr/lib/python3.12/importlib/__init__.py:90: in import_module
> return _bootstrap._gcd_import(name[level:], package, level)
> tests/filter/test_relative_dates.py:12: in <module>
> from augur.filter import register_arguments
> augur/__init__.py:15: in <module>
> from .io.print import print_err
> augur/io/__init__.py:6: in <module>
> from .metadata import read_metadata # noqa: F401
> augur/io/metadata.py:5: in <module>
> import pyfastx
> E ModuleNotFoundError: No module named 'pyfastx'
> _ ERROR collecting .pybuild/cpython3_3.12/build/tests/filter/test_subsample.py _
> ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/tests/filter/test_subsample.py'.
> Hint: make sure your test modules/packages have valid Python names.
> Traceback:
> /usr/lib/python3.12/importlib/__init__.py:90: in import_module
> return _bootstrap._gcd_import(name[level:], package, level)
> tests/filter/test_subsample.py:4: in <module>
> import augur.filter.subsample
> augur/__init__.py:15: in <module>
> from .io.print import print_err
> augur/io/__init__.py:6: in <module>
> from .metadata import read_metadata # noqa: F401
> augur/io/metadata.py:5: in <module>
> import pyfastx
> E ModuleNotFoundError: No module named 'pyfastx'
> _____ ERROR collecting .pybuild/cpython3_3.12/build/tests/io/test_file.py ______
> ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/tests/io/test_file.py'.
> Hint: make sure your test modules/packages have valid Python names.
> Traceback:
> /usr/lib/python3.12/importlib/__init__.py:90: in import_module
> return _bootstrap._gcd_import(name[level:], package, level)
> tests/io/test_file.py:2: in <module>
> import augur.io.file
> augur/__init__.py:15: in <module>
> from .io.print import print_err
> augur/io/__init__.py:6: in <module>
> from .metadata import read_metadata # noqa: F401
> augur/io/metadata.py:5: in <module>
> import pyfastx
> E ModuleNotFoundError: No module named 'pyfastx'
> ___ ERROR collecting .pybuild/cpython3_3.12/build/tests/io/test_metadata.py ____
> ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/tests/io/test_metadata.py'.
> Hint: make sure your test modules/packages have valid Python names.
> Traceback:
> /usr/lib/python3.12/importlib/__init__.py:90: in import_module
> return _bootstrap._gcd_import(name[level:], package, level)
> tests/io/test_metadata.py:7: in <module>
> from augur.io.metadata import InvalidDelimiter, read_table_to_dict, read_metadata_with_sequences, write_records_to_tsv
> augur/__init__.py:15: in <module>
> from .io.print import print_err
> augur/io/__init__.py:6: in <module>
> from .metadata import read_metadata # noqa: F401
> augur/io/metadata.py:5: in <module>
> import pyfastx
> E ModuleNotFoundError: No module named 'pyfastx'
> ___ ERROR collecting .pybuild/cpython3_3.12/build/tests/io/test_sequences.py ___
> ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/tests/io/test_sequences.py'.
> Hint: make sure your test modules/packages have valid Python names.
> Traceback:
> /usr/lib/python3.12/importlib/__init__.py:90: in import_module
> return _bootstrap._gcd_import(name[level:], package, level)
> tests/io/test_sequences.py:13: in <module>
> import augur.io.sequences
> augur/__init__.py:15: in <module>
> from .io.print import print_err
> augur/io/__init__.py:6: in <module>
> from .metadata import read_metadata # noqa: F401
> augur/io/metadata.py:5: in <module>
> import pyfastx
> E ModuleNotFoundError: No module named 'pyfastx'
> _ ERROR collecting .pybuild/cpython3_3.12/build/tests/io/test_shell_command_runner.py _
> ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/tests/io/test_shell_command_runner.py'.
> Hint: make sure your test modules/packages have valid Python names.
> Traceback:
> /usr/lib/python3.12/importlib/__init__.py:90: in import_module
> return _bootstrap._gcd_import(name[level:], package, level)
> tests/io/test_shell_command_runner.py:5: in <module>
> from augur.io.shell_command_runner import ShellCommandRunner
> augur/__init__.py:15: in <module>
> from .io.print import print_err
> augur/io/__init__.py:6: in <module>
> from .metadata import read_metadata # noqa: F401
> augur/io/metadata.py:5: in <module>
> import pyfastx
> E ModuleNotFoundError: No module named 'pyfastx'
> ______ ERROR collecting .pybuild/cpython3_3.12/build/tests/io/test_vcf.py ______
> ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/tests/io/test_vcf.py'.
> Hint: make sure your test modules/packages have valid Python names.
> Traceback:
> /usr/lib/python3.12/importlib/__init__.py:90: in import_module
> return _bootstrap._gcd_import(name[level:], package, level)
> tests/io/test_vcf.py:2: in <module>
> import augur.io.vcf
> augur/__init__.py:15: in <module>
> from .io.print import print_err
> augur/io/__init__.py:6: in <module>
> from .metadata import read_metadata # noqa: F401
> augur/io/metadata.py:5: in <module>
> import pyfastx
> E ModuleNotFoundError: No module named 'pyfastx'
> _ ERROR collecting .pybuild/cpython3_3.12/build/tests/util_support/test_color_parser.py _
> ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/tests/util_support/test_color_parser.py'.
> Hint: make sure your test modules/packages have valid Python names.
> Traceback:
> /usr/lib/python3.12/importlib/__init__.py:90: in import_module
> return _bootstrap._gcd_import(name[level:], package, level)
> tests/util_support/test_color_parser.py:1: in <module>
> from augur.util_support.color_parser import ColorParser
> augur/__init__.py:15: in <module>
> from .io.print import print_err
> augur/io/__init__.py:6: in <module>
> from .metadata import read_metadata # noqa: F401
> augur/io/metadata.py:5: in <module>
> import pyfastx
> E ModuleNotFoundError: No module named 'pyfastx'
> _ ERROR collecting .pybuild/cpython3_3.12/build/tests/util_support/test_node_data.py _
> ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/tests/util_support/test_node_data.py'.
> Hint: make sure your test modules/packages have valid Python names.
> Traceback:
> /usr/lib/python3.12/importlib/__init__.py:90: in import_module
> return _bootstrap._gcd_import(name[level:], package, level)
> tests/util_support/test_node_data.py:1: in <module>
> from augur.util_support.node_data import DuplicatedNonDictAttributeError
> augur/__init__.py:15: in <module>
> from .io.print import print_err
> augur/io/__init__.py:6: in <module>
> from .metadata import read_metadata # noqa: F401
> augur/io/metadata.py:5: in <module>
> import pyfastx
> E ModuleNotFoundError: No module named 'pyfastx'
> _ ERROR collecting .pybuild/cpython3_3.12/build/tests/util_support/test_node_data_file.py _
> ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/tests/util_support/test_node_data_file.py'.
> Hint: make sure your test modules/packages have valid Python names.
> Traceback:
> /usr/lib/python3.12/importlib/__init__.py:90: in import_module
> return _bootstrap._gcd_import(name[level:], package, level)
> tests/util_support/test_node_data_file.py:3: in <module>
> from augur.__version__ import __version__
> augur/__init__.py:15: in <module>
> from .io.print import print_err
> augur/io/__init__.py:6: in <module>
> from .metadata import read_metadata # noqa: F401
> augur/io/metadata.py:5: in <module>
> import pyfastx
> E ModuleNotFoundError: No module named 'pyfastx'
> _ ERROR collecting .pybuild/cpython3_3.12/build/tests/util_support/test_node_data_reader.py _
> ImportError while importing test module '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build/tests/util_support/test_node_data_reader.py'.
> Hint: make sure your test modules/packages have valid Python names.
> Traceback:
> /usr/lib/python3.12/importlib/__init__.py:90: in import_module
> return _bootstrap._gcd_import(name[level:], package, level)
> tests/util_support/test_node_data_reader.py:1: in <module>
> from augur.util_support.node_data_reader import NodeDataReader
> augur/__init__.py:15: in <module>
> from .io.print import print_err
> augur/io/__init__.py:6: in <module>
> from .metadata import read_metadata # noqa: F401
> augur/io/metadata.py:5: in <module>
> import pyfastx
> E ModuleNotFoundError: No module named 'pyfastx'
> =============================== warnings summary ===============================
> ../../../../../../usr/lib/python3/dist-packages/dateutil/tz/tz.py:37
> /usr/lib/python3/dist-packages/dateutil/tz/tz.py:37: DeprecationWarning: datetime.datetime.utcfromtimestamp() is deprecated and scheduled for removal in a future version. Use timezone-aware objects to represent datetimes in UTC: datetime.datetime.fromtimestamp(timestamp, datetime.UTC).
> EPOCH = datetime.datetime.utcfromtimestamp(0)
>
> -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html
> =========================== short test summary info ============================
> ERROR tests/test_align.py
> ERROR tests/test_clades.py
> ERROR tests/test_frequencies.py
> ERROR tests/test_mask.py
> ERROR tests/test_parse.py
> ERROR tests/test_titer_models.py
> ERROR tests/test_translate.py
> ERROR tests/test_utils.py
> ERROR tests/test_validate.py
> ERROR tests/test_validate_export.py
> ERROR tests/dates/test_ambiguous_date.py
> ERROR tests/dates/test_dates.py
> ERROR tests/filter/test_relative_dates.py
> ERROR tests/filter/test_subsample.py
> ERROR tests/io/test_file.py
> ERROR tests/io/test_metadata.py
> ERROR tests/io/test_sequences.py
> ERROR tests/io/test_shell_command_runner.py
> ERROR tests/io/test_vcf.py
> ERROR tests/util_support/test_color_parser.py
> ERROR tests/util_support/test_node_data.py
> ERROR tests/util_support/test_node_data_file.py
> ERROR tests/util_support/test_node_data_reader.py
> !!!!!!!!!!!!!!!!!!! Interrupted: 23 errors during collection !!!!!!!!!!!!!!!!!!!
> ======================== 1 warning, 23 errors in 1.83s =========================
> E: pybuild pybuild:395: test: plugin distutils failed with: exit code=2: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.12/build; python3.12 -m pytest tests
> I: pybuild base:310: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build; python3.11 -m pytest tests
> ============================= test session starts ==============================
> platform linux -- Python 3.11.7, pytest-7.4.3, pluggy-1.3.0
> rootdir: /<<PKGBUILDDIR>>
> plugins: mock-3.12.0
> collected 341 items
>
> tests/test_align.py ............................................... [ 13%]
> tests/test_clades.py ......... [ 16%]
> tests/test_flake8.py . [ 16%]
> tests/test_frequencies.py ........................ [ 23%]
> tests/test_mask.py ....................................... [ 35%]
> tests/test_mypy.py . [ 35%]
> tests/test_parse.py ... [ 36%]
> tests/test_schemas.py .......... [ 39%]
> tests/test_titer_models.py . [ 39%]
> tests/test_translate.py .. [ 40%]
> tests/test_utils.py ........... [ 43%]
> tests/test_validate.py ................... [ 48%]
> tests/test_validate_export.py .. [ 49%]
> tests/dates/test_ambiguous_date.py ............................. [ 58%]
> tests/dates/test_dates.py ....... [ 60%]
> tests/filter/test_relative_dates.py ................ [ 64%]
> tests/filter/test_subsample.py ................ [ 69%]
> tests/io/test_file.py ............. [ 73%]
> tests/io/test_metadata.py ................................... [ 83%]
> tests/io/test_sequences.py .................... [ 89%]
> tests/io/test_shell_command_runner.py .......... [ 92%]
> tests/io/test_vcf.py ....... [ 94%]
> tests/util_support/test_color_parser.py .... [ 95%]
> tests/util_support/test_node_data.py ... [ 96%]
> tests/util_support/test_node_data_file.py ...... [ 98%]
> tests/util_support/test_node_data_reader.py ...... [100%]
>
> ============================= 341 passed in 14.97s =============================
> dh_auto_test: error: pybuild --test --test-pytest -i python{version} -p "3.12 3.11" returned exit code 13
The full build log is available from:
http://qa-logs.debian.net/2023/12/12/augur_23.1.1-1_unstable.log
All bugs filed during this archive rebuild are listed at:
https://bugs.debian.org/cgi-bin/pkgreport.cgi?tag=ftbfs-20231212;users=lucas@debian.org
or:
https://udd.debian.org/bugs/?release=na&merged=ign&fnewerval=7&flastmodval=7&fusertag=only&fusertagtag=ftbfs-20231212&fusertaguser=lucas@debian.org&allbugs=1&cseverity=1&ctags=1&caffected=1#results
A list of current common problems and possible solutions is available at
http://wiki.debian.org/qa.debian.org/FTBFS . You're welcome to contribute!
If you reassign this bug to another package, please mark it as 'affects'-ing
this package. See https://www.debian.org/Bugs/server-control#affects
If you fail to reproduce this, please provide a build log and diff it with mine
so that we can identify if something relevant changed in the meantime.
Date: Wed, 13 Dec 2023 10:49:07 +0000
From: Debian FTP Masters <ftpmaster@ftp-master.debian.org>
To: 1058394-close@bugs.debian.org
Subject: Bug#1058394: fixed in pyfastx 2.0.2-2
Source: pyfastx
Source-Version: 2.0.2-2
Done: Étienne Mollier <emollier@debian.org>
We believe that the bug you reported is fixed in the latest version of
pyfastx, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 1058394@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Étienne Mollier <emollier@debian.org> (supplier of updated pyfastx package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 13 Dec 2023 10:45:00 +0100
Source: pyfastx
Architecture: source
Version: 2.0.2-2
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Closes: 1058394
Changes:
pyfastx (2.0.2-2) unstable; urgency=medium
.
* Source only upload for Python 3.12 support. (Closes: #1058394)
Checksums-Sha1:
b19e3d166e923be07bc109f56d704b8bdaf37497 2292 pyfastx_2.0.2-2.dsc
8bc22618205011e882305b5381207f071fab5424 33592 pyfastx_2.0.2-2.debian.tar.xz
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51206c3ccbb34e8c93729fbea44806515b4f2174a847996170a86c0cf4cbdd34 33592 pyfastx_2.0.2-2.debian.tar.xz
Files:
d46ef0ca8384efc3b9bcbf4005f55a50 2292 science optional pyfastx_2.0.2-2.dsc
758ff68e1d29221bd9b337064770a6df 33592 science optional pyfastx_2.0.2-2.debian.tar.xz
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----- End forwarded message -----
--
.''`. Étienne Mollier <emollier@debian.org>
: :' : gpg: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da
`. `' sent from /dev/pts/5, please excuse my verbosity
`- on air: Iris Divine - Silver Tongued Lie
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