Re: [Advent bug squashing] Re: PIQUE
Hi Tony,
Am Sun, Dec 04, 2022 at 10:51:02AM +0000 schrieb Tony Travis:
> This is my BUG report:
>
> > https://bugs.launchpad.net/ubuntu/+source/pique/+bug/1998685
>
> I filed it using "ubuntu-bug".
Well, Ubuntu bug reports do not reach our attention here. Please use
reportbug pique
next time.
> > BTW, could you recommend some kind of test with some small example data
> > set? We could wrap this into a CI test and would be able to detect
> > these issues immediately.
>
> There is a Makefile in the PIQUE "test" folder on the GitHub repo that could
> be modified to test the installed version of PIQUE, rather than testing the
> version of PIQUE in the source tree.
>
> It downloads test data: We had a conversation about this previously and I
> explained that GWAS requires quite a 'large' data-set to test it (44K
> SNP's). In fact, the 'test' data is small by comparison to a typical GWAS
> that we do with millions of SNP's. GWAS requires a genotype file and a
> phenotype file. The phenotype file, and subsets, of it are in the PIQUE
> "test" folder.
Ahhh, well, I remember now and also see the test folder. Thanks again
for the pointer.
> Thanks again for packaging "PIQUE",
You are welcome
Andreas.
--
http://fam-tille.de
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