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Bug#1004152: marked as done (ITP: malt -- sequence alignment and analysis tool to process sequencing data)

Your message dated Sat, 19 Feb 2022 11:00:10 +0000
with message-id <E1nLNTG-0006Ms-3c@fasolo.debian.org>
and subject line Bug#1004152: fixed in malt 0.5.2-1
has caused the Debian Bug report #1004152,
regarding ITP: malt -- sequence alignment and analysis tool to process sequencing data
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
1004152: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=1004152
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Debian-med team <debian-med@lists.debian.org>
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-med@lists.debian.org

* Package name    : malt
  Version         : 0.5.2
  Upstream Author : Daniel Huson <daniel.huson@uni-tuebingen.de>
* URL             : https://github.com/danielhuson/malt
* License         : GPL-3+
  Programming Lang: Java
  Description     : sequence alignment and analysis tool to process sequencing data

MALT, an acronym for MEGAN alignment tool, is a sequence alignment and
analysis tool designed for processing high-throughput sequencing data,
especially in the context of metagenomics. It is an extension of MEGAN6,
the MEGenome Analyzer and is designed to provide the input for MEGAN6,
but can also be used independently of MEGAN6.

The core of the program is a sequence alignment engine that aligns DNA
or protein sequences to a DNA or protein reference database in either
BLASTN (DNA queries and DNA references), BLASTX (DNA queries and protein
references) or BLASTP (protein queries and protein references) mode. The
engine uses a banded-alignment algorithm with ane gap scores and BLOSUM
substitution matrices (in the case of protein alignments). The program
can compute both local alignments (Smith-Waterman) or semi-global
alignments (in which reads are aligned end-to-end into reference
sequences), the latter being more appropriate for aligning metagenomic
reads to references.

The package will be team-maintained in Debian-med team.

--- End Message ---
--- Begin Message --- 
Source: malt
Source-Version: 0.5.2-1
Done: Pierre Gruet <pgt@debian.org>

We believe that the bug you reported is fixed in the latest version of
malt, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 1004152@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Pierre Gruet <pgt@debian.org> (supplier of updated malt package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Fri, 18 Feb 2022 14:29:48 +0100
Source: malt
Binary: malt
Architecture: source all
Version: 0.5.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Pierre Gruet <pgt@debian.org>
Description:
 malt       - sequence alignment and analysis tool to process sequencing data
Closes: 1004152
Changes:
 malt (0.5.2-1) unstable; urgency=medium
 .
   * Initial release (Closes: #1004152)
Checksums-Sha1:
 bcc7f0a89aa22f50f2fcf13e0085fa62f444e5ef 1975 malt_0.5.2-1.dsc
 97f954c9dd87bdd8f1cfe04c75a79a7f175892ec 437746 malt_0.5.2.orig.tar.gz
 3207a6ddc0ab6c769100c43e8090b137cba34f9f 6404 malt_0.5.2-1.debian.tar.xz
 c5d952f6d1131cfa37b02dd7b978d2f0d50088ff 416000 malt_0.5.2-1_all.deb
 1a5cdd3f118c3ce2221828dd9219bf3812760ff0 15237 malt_0.5.2-1_amd64.buildinfo
Checksums-Sha256:
 41d760b2ab7824dbeb528e3b2690c6bf41abf61c4791d14c188f34b62bfee20c 1975 malt_0.5.2-1.dsc
 904eb781aa0c7369bd7bccb88a3e8696fa83513e073988f0d76f09faea2dc1a1 437746 malt_0.5.2.orig.tar.gz
 558b8949f84600d3df011d351c2bbc6fce1ae8feadbda2dd06b05b1b734879b8 6404 malt_0.5.2-1.debian.tar.xz
 c019ccff247efb961218f562e5a979247f68d2ef161bd830c52f03f0a4045a6f 416000 malt_0.5.2-1_all.deb
 a988e17536754cae269c1dfd14cd3a287fcd3f39ac816d8a11c3c42eda327066 15237 malt_0.5.2-1_amd64.buildinfo
Files:
 f2876c2c18f5e80a485c111f7151c1d7 1975 science optional malt_0.5.2-1.dsc
 1a9cc3c4cd75b2f13ea2bb5a76b5da57 437746 science optional malt_0.5.2.orig.tar.gz
 d6845786637e4eda46bb0030dc00db4d 6404 science optional malt_0.5.2-1.debian.tar.xz
 4718b3f1390612628def9126eab478f7 416000 science optional malt_0.5.2-1_all.deb
 c4325ff56180d98e0f125f269e89701c 15237 science optional malt_0.5.2-1_amd64.buildinfo

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--- End Message ---
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