Re: Finishing ncbi-vdb and sra-sdk
[Pierre, please read at the end]
Hi Aaron,
Am Mon, Oct 10, 2022 at 10:48:58PM -0400 schrieb Aaron M. Ucko:
> ucko@debian.org (Aaron M. Ucko) writes:
>
> > Ah, right, sra-sdk will need to go through NEW too -- the ngs-sdk code
> > it absorbed underwent an SONAME bump along the way. (All necessary
> > ncbi-vdb changes passed NEW a few weeks ago, but ncbi-vdb 3.x is sitting
> > in experimental until sra-sdk joins it.) I'll see what I can do.
>
> I've made a fair bit of progress, and pushed what I have so far --
> though one commit accidentally wound up with a stray change, so I'd
> appreciate it if somebody could please grant me whatever access I need
> to proceed with a force-push to master so I can clean that up properly.
I wanted to set you "Owner" of the Debian Med team repository since this
is the maximum power. I realised you are owner. So either someone has
beaten me and just did so or something is wrong if you can't do what you
want to do.
> It's still not entirely ready, though. In particular:
> - Three tests are failing; I need to investigate why. (I've been
> building in nocheck mode for now to sort out everything else.)
> - On a possibly related note, I should see if anything from ngs-sdk's
> debian/patches is of interest here.
> - The javadocs contain embedded copies of files from libjs-jquery and
> libjs-jquery-ui that should become symlinks (with dependencies added).
I've seen packages where this is ignored. If you want to approach this
and need helping hands just ask here.
> - Lower priority: I have not yet taught the Java bindings to look for
> full SONAMEs, so they still depend on a -dev package. I'd appreciate
> help from someone more familiar with Java.
I admit I do not understand the problem but I have put Pierre in CC.
A comment to your question in your other mail: Sorry, I have no idea
how to teach CI to pick from experimental. On the other hand I do not
think it should stop us from uploading if CI will fail as long as some
preconditions are in experimental. In my local pbuilder which I'm using
to run autopkgtests I'm feeding the needed version of a package into the
local pbuilder repository.
Hope this helps
Andreas.
--
http://fam-tille.de
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