Re: Problems finding RocksDBConfig.cmake (Was: sortmerna: "/usr/bin/ld: cannot find -lpthreads")
On Mon, Jan 31, 2022 at 1:47 PM Andreas Tille <andreas@an3as.eu> wrote:
>
> Hi Mathieu,
>
> Am Mon, Jan 31, 2022 at 08:29:09AM +0100 schrieb Mathieu Malaterre:
> > > librocksdb-dev (>= 6.25.3) arrived in experimental and it contains
> > >
> > > /usr/lib/$(DEB_HOST_MULTIARCH)/cmake/RocksDBConfig.cmake
> >
> > That looks right.
>
> Thanks for comfirming.
>
> > The following cmake works for me:
> >
> > ```
> > % cat CMakeLists.txt
> > cmake_minimum_required(VERSION 3.22)
> > project(p)
> > find_package(RocksDB)
> > ```
>
> After I simplified the cmake file[1]
> >
> > What's the exact cmake command used in sortmerna? Maybe the error is
> > somewhere above (like a missing zlib, bzip2, zstd ...)
>
> It was more complex than here. The simplification uncovered that some
> more Build-Depends are needed (see bug #1004665) and enabled me moving
> on to a new error:
>
> ...
> RocksDB package OK
> RocksDB::rocksdb-shared LOCATION: /usr/lib/x86_64-linux-gnu/librocksdb.so.6.25.3
> RocksDB::rocksdb-shared LOCATION_DEBUG: /usr/lib/x86_64-linux-gnu/librocksdb.so.6.25.3
> RocksDB::rocksdb-shared LOCATION_DEBUG: lib-NOTFOUND
> RocksDB::rocksdb-shared IMPORTED_CONFIGURATIONS: NONE
> RocksDB::rocksdb-shared IMPORTED_IMPLIB: lib-NOTFOUND
> RocksDB::rocksdb LIBRARY_OUTPUT_NAME: lib-NOTFOUND
> Using Static RocksDB lib
> RocksDB::rocksdb transitive link dependencies: $<LINK_ONLY:gflags::gflags_shared>;$<LINK_ONLY:Snappy::snappy>;$<LINK_ONLY:ZLIB::ZLIB>;/usr/lib/x86_64-linux-gnu/libbz2.so;$<LINK_ONLY: zstd::zstd>;$<LINK_ONLY:-lpthread>
> rocksdb transitive link dependencies AFTER modification: /usr/lib/x86_64-linux-gnu/libz.so;Threads::Threads
> RapidJson_DIR: RapidJson_DIR-NOTFOUND
> RapidJSON_INCLUDE_DIR: RapidJSON_INCLUDE_DIR-NOTFOUND
> CMake Error at cmake/modules/FindRapidJson.cmake:35 (file):
> file STRINGS file
> "/build/sortmerna-4.3.4/src/sortmerna/RapidJson_DIR-NOTFOUND/RapidJSONConfigVersion.cmake"
> cannot be read.
> Call Stack (most recent call first):
> src/sortmerna/CMakeLists.txt:71 (include)
>
>
> CMake Error at cmake/modules/FindRapidJson.cmake:37 (string):
> string sub-command REGEX, mode MATCH needs at least 5 arguments total to
> command.
Upstream is doing very odd stuff...
% dpkg -L rapidjson-dev | grep cmake
/usr/share/cmake
/usr/share/cmake/RapidJSON
/usr/share/cmake/RapidJSON/RapidJSONConfig.cmake
/usr/share/cmake/RapidJSON/RapidJSONConfigVersion.cmake
So I simply remove the dummy FindRapidJson from upstream and prefer
the one ship in Debian package.
Just git pull my commit and let me know how it goes.
> Call Stack (most recent call first):
> src/sortmerna/CMakeLists.txt:71 (include)
>
>
> version_line:
> CMAKE_MATCH_0:
> -- Could NOT find RapidJSON (missing: RapidJSON_INCLUDE_DIR)
> RapidJSON_FOUND: FALSE
> RapidJSON_VERSION:
> RapidJson_DIR: RapidJson_DIR-NOTFOUND
> RapidJSON_INCLUDE_DIR: RapidJSON_INCLUDE_DIR-NOTFOUND
> CMake Error at cmake/modules/FindRapidJson.cmake:35 (file):
> file STRINGS file
> "/build/sortmerna-4.3.4/src/sortmerna/RapidJson_DIR-NOTFOUND/RapidJSONConfigVersion.cmake"
> cannot be read.
> Call Stack (most recent call first):
> src/sortmerna/CMakeLists.txt:73 (find_package)
>
>
> CMake Error at cmake/modules/FindRapidJson.cmake:37 (string):
> string sub-command REGEX, mode MATCH needs at least 5 arguments total to
> command.
> Call Stack (most recent call first):
> src/sortmerna/CMakeLists.txt:73 (find_package)
>
>
> version_line:
> CMAKE_MATCH_0:
> CMake Warning (dev) at /usr/share/cmake-3.22/Modules/FindPackageHandleStandardArgs.cmake:438 (message):
> The package name passed to `find_package_handle_standard_args` (RapidJSON)
> does not match the name of the calling package (RapidJson). This can lead
> to problems in calling code that expects `find_package` result variables
> (e.g., `_FOUND`) to follow a certain pattern.
> Call Stack (most recent call first):
> cmake/modules/FindRapidJson.cmake:43 (find_package_handle_standard_args)
> src/sortmerna/CMakeLists.txt:73 (find_package)
>
>
> Any further hints?
>
> Kind regards
>
> Andreas.
>
>
> [1] https://salsa.debian.org/med-team/sortmerna/-/blob/master/debian/patches/cmake_RocksDB.patch
>
> --
> http://fam-tille.de
>
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