On 31/07/21 11:23 AM, Shruti Sridhar wrote: > > yanagiba is almost ready, since you downloaded data from ncbi database, > > can you write a script for fetching data by running it? > > Just like the way I did it for pilercr[5] > > I don't have a good idea of navigating this file at the right location > > Note that doing this is ``optional``, and let me know if it cannot be done > > > I have pushed the get-test-data script. Could you please have a look at it? > Thank you! Looks pretty good. The fastq-dump command piped with head was giving me a weird SIGPIPE error so I split it into two operations instead. And the data seemed to have changed (just a little) so I updated this and pushed. Nilesh
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