Re: [Advent bug squashing] Pierre Gruet fixed: Bug#1002155: marked as done (libgoby-java: FTBFS: [WARNING] /<<PKGBUILDDIR>>/goby-io/../goby-distribution/src/main/java/org/campagnelab/goby/modes/FastaToCompactMode.java:23: error: package edu.rit.pj does not exist)]
Hi Pierre,
Am Thu, Dec 23, 2021 at 05:42:24PM +0100 schrieb Pierre Gruet:
> You're welcome! Thanks for your help on this.
That's team work, isn't it? ;-)
> While we are at it: this new version solved the issue but another test
> failed, seemingly for the same reason. So I uploaded version 3.3.1+dfsg2-7
> which ensures the folder in which tests should print their outputs exists
> before running them. Well, this worked!
Yes, I realised the other upload.
> Sidenote: I have just uploaded latest upstream version of igv (which depends
> on goby). To do so, I had to remove some features that need the Amazon SDK.
> It should not be a real problem for our users as those features simplify
> grasping files from Amazon servers in some conditions, but they don't
> prevent anyone from getting genome files and browsing them!
Sounds very good!
BTW, if you are seeking new challanges: It would be great to have
malt[1] and megan-ce[2]. Both repositories are untouched for more than
three years. The point where I gave up is that both projects need code
from each other and we somehow need to bootstrap one first by injecting
the code from the other and once it is available make the other depend
from it. At the time I gave up with this there were also problems with
libsis-hdf5-java and I never managed to come back to this. So its not
something that we need to hurry about - but the project itself is
somehow known.
But may be its not as important as gatk - so well, there are some
challenges left for the new year. ;-)
Kind regards and thanks again
Andreas.
[1] https://salsa.debian.org/med-team/malt
[2] https://salsa.debian.org/med-team/megan-ce
--
http://fam-tille.de
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