Re: [Advent bug squashing] Pierre Gruet fixed: Bug#1002155: marked as done (libgoby-java: FTBFS: [WARNING] /<<PKGBUILDDIR>>/goby-io/../goby-distribution/src/main/java/org/campagnelab/goby/modes/FastaToCompactMode.java:23: error: package edu.rit.pj does not exist)]

[Pierre Gruet <pgt@debian.org>]

Hi Andreas,

On 23/12/2021 17:27, Andreas Tille wrote:
> Thanks Pierre for your work. :-)
>
> Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
> Changed-By: Pierre Gruet <pgt@debian.org>
> Closes: 1002155
> Changes:
>   libgoby-java (3.3.1+dfsg2-6) unstable; urgency=medium
>   .
>     * Adding --no-parallel flag to dh_auto_test to avoid concurrent access to
>       some files during the tests (Closes: #1002155)

You're welcome! Thanks for your help on this.

While we are at it: this new version solved the issue but another test 
failed, seemingly for the same reason. So I uploaded version 
3.3.1+dfsg2-7 which ensures the folder in which tests should print their 
outputs exists before running them. Well, this worked!



Sidenote: I have just uploaded latest upstream version of igv (which 
depends on goby). To do so, I had to remove some features that need the 
Amazon SDK. It should not be a real problem for our users as those 
features simplify grasping files from Amazon servers in some conditions, 
but they don't prevent anyone from getting genome files and browsing them!


Cheers,

--
Pierre