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Bug#995294: marked as done (ITP: tipp -- taxonomic identification and abundance profiling tool)

Your message dated Tue, 16 Nov 2021 18:00:16 +0000
with message-id <E1mn2ki-000Hff-QI@fasolo.debian.org>
and subject line Bug#995294: fixed in tipp 1.0+dfsg-1
has caused the Debian Bug report #995294,
regarding ITP: tipp -- taxonomic identification and abundance profiling tool
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
995294: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=995294
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: wnpp
Severity: wishlist
Owner: Debian-med team <debian-med@lists.debian.org>
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-med@lists.debian.org

* Package name    : tipp
  Version         : 1.0
  Upstream Author : Siavash Mirarab
* URL             : https://github.com/TeraTrees/TIPP
* License         : GPL-3
  Programming Lang: Python, Java
  Description     : taxonomic identification and abundance profiling tool

TIPP is a modification of SEPP for classifying query sequences (i.e. reads)
using phylogenetic placement.

TIPP inserts each read into a taxonomic tree and uses the insertion location
to identify the taxonomic lineage of the read. The novel idea behind TIPP is
that rather than using the single best alignment and placement for taxonomic
identification, it uses a collection of alignments and placements and
considers statistical support for each alignment and placement.

TIPP can also be used for abundance estimation by computing an abundance
profile on the reads binned to marker genes in a reference dataset.


sepp is already packaged in Debian, and up to now, the binaries of tipp were
provided by sepp. Now the sources of sepp and tipp have been separated, which
is the reason for making this package.

tipp will be team-maintained by Debian-med team.

--- End Message ---
--- Begin Message --- 
Source: tipp
Source-Version: 1.0+dfsg-1
Done: Pierre Gruet <pgt@debian.org>

We believe that the bug you reported is fixed in the latest version of
tipp, which is due to be installed in the Debian FTP archive.

A summary of the changes between this version and the previous one is
attached.

Thank you for reporting the bug, which will now be closed.  If you
have further comments please address them to 995294@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.

Debian distribution maintenance software
pp.
Pierre Gruet <pgt@debian.org> (supplier of updated tipp package)

(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)


-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 1.8
Date: Thu, 30 Sep 2021 14:45:31 +0200
Source: tipp
Binary: tipp
Architecture: source amd64
Version: 1.0+dfsg-1
Distribution: experimental
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Pierre Gruet <pgt@debian.org>
Description:
 tipp       - tool for Taxonomic Identification and Phylogenetic Profiling
Closes: 995294
Changes:
 tipp (1.0+dfsg-1) experimental; urgency=medium
 .
   * Initial release (Closes: #995294)
Checksums-Sha1:
 1322c0a84f27fbf8abac1e22bcd8d049eb8a3af0 2040 tipp_1.0+dfsg-1.dsc
 5383eb4919928d50ff9c5f92279b427565c8a854 67084 tipp_1.0+dfsg.orig.tar.xz
 cde95f13dafabcecf9ab1b980a63712da6b5b068 10056 tipp_1.0+dfsg-1.debian.tar.xz
 11ea79152b2608be3ad9746c839de796ac7671ab 10067 tipp_1.0+dfsg-1_amd64.buildinfo
 230266cc0a1199010c098d432b89a651f16e257d 129236 tipp_1.0+dfsg-1_amd64.deb
Checksums-Sha256:
 e2f0c1bbcff6b524835ad51ec57179107432ff869ed1608561e5598610b56383 2040 tipp_1.0+dfsg-1.dsc
 48bbabdc3b6267ad250dd60664dc2f76f0da924676a83aa4490e23219144a9eb 67084 tipp_1.0+dfsg.orig.tar.xz
 1daa37f342c0ef7ebe26c47032d2a1db7bb3eff49dbad04e8f9b2dfd4e95b71e 10056 tipp_1.0+dfsg-1.debian.tar.xz
 864ae1d65cb798e52465b7970d2061a7f0fcc8caaedebdb8cc9dc7680a38a771 10067 tipp_1.0+dfsg-1_amd64.buildinfo
 bd229d0a1d8280b364cb4ee625a6bf8ba7d560f87fd5724fc7c3a40c8fa1dacf 129236 tipp_1.0+dfsg-1_amd64.deb
Files:
 9091e0d6e0fd78a6e00d8c8072b8c2c7 2040 science optional tipp_1.0+dfsg-1.dsc
 71211248cd41a5e336e9aa6dcb1e1beb 67084 science optional tipp_1.0+dfsg.orig.tar.xz
 90a2901219686517ef774ffb3b44b36a 10056 science optional tipp_1.0+dfsg-1.debian.tar.xz
 33ff706e5dd1521711b61a7aaa87337f 10067 science optional tipp_1.0+dfsg-1_amd64.buildinfo
 d06ff8466b40d160a3eb2d05522dfb72 129236 science optional tipp_1.0+dfsg-1_amd64.deb

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--- End Message ---
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