On 9/13/21 11:07 PM, Steffen Möller wrote: > > On 13.09.21 18:27, Nilesh Patra wrote: >> r-cran-gprofiler2, last missing dep of pigx-rnaseq has been accepted some hours ago. > This is great news. Thank you for the upload. I just installed it. Was > not aware that gprofiler2 removes an already installed gprofiler. You ACKed a Breaks+Replaces here[1], and that was the plan, I believe. [1]: https://lists.debian.org/debian-med/2021/07/msg00106.html >> However, I see that you've added this line in d/ch: "hisat2 - upstream changed default genomic aligner" >> What would this mean? There's no upstream release for hisat2, as I saw, what needs to be done to get this in then? > > The package already ships in Debian. This was just that d/changelog is > also meant to summarize what is new in the respective release. OK, so this was for summary, and not for any TODO, right? > d/control > put it as > hisat2|rna-star <!nocheck>, > which is not perfectly correct, I tend to think, since one would need to > adjust the testing for rna-star if I get this right. I don't know about the software myself, if you could take a look and push what you deem sensible, that'd be very cool. > I just wanted to build this but went into > > The following packages have unmet dependencies: > r-bioc-deseq2 : Depends: r-api-bioc-3.1 > Once that is in I can do the cowbuilding. But otherwise it is just fine. Ah, yes. This is bit with the bioconductor transition as well. I'll hopefully upload this one in a while. Maybe by tomorrow evening, I hope. >> Also, with r-cran-gprofiler2, r-cran-grofiler is now obsolete. pigx-rnaseq was the last package which was needing it, >> and with the new release this will also go away. I don't see a point in keeping cran-grpofiler around anymore. >> Would you object it's removal? >> Also, @Andreas, what d'you think? > > r-cran-gprofiler should not make it into the next release. But I do not > see a point into removing it from testing. I suggest to file an RC bug > against it, so we do not forget about it. > But do not immediately ask for > its removal. Filed #994212 Cheers, -- Nilesh Patra Debian Developer, Uploading ⢀⣴⠾⠻⢶⣦⠀ ⣾⠁⢠⠒⠀⣿⡁ ⢿⡄⠘⠷⠚⠋ nilesh@debian.org / nileshpatra.info / tchncs.de ⠈⠳⣄
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