Re: PyEnsembl - how does that help us?
On 20 May 2021 3:42:20 am IST, "Steffen Möller" <steffen_moeller@gmx.de> wrote:
>Quick update - I have package all dependencies fo xpore (and of
>pyensembl with it) , packages are tagged orange on the spreadsheet's
>"Nanopore" tab
>(https://docs.google.com/spreadsheets/d/1tApLhVqxRZ2VOuMH_aPUgFENQJfbLlB_PFH_Ah_q7hM/edit#gid=1806578173)
>- but, no idea how you are feeling about it all, but I think this
>better
>waits till after the release.
This can be uploaded to NEW right now, no?
It won't anyway enter testing. Or do you want to wait for maybe more stable versions?
>@Nilesh, I want to run pyensembl locally to ensure that it works - it
>is
>not too far from a gigabyte that is downloaded if I am interpreting
>the
>URLs right and am not erroneous, which just for testing purposes is a
>bit too much.
Yeah, right. Large size test data becomes an RC bug, for example here[1]
Probably we'll then have to keep testing it locally, unless ofcourse if it's possible to find a smaller dataset that is sensible on debci workers.
[1]: https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=964101
Nilesh
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