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Re: PyEnsembl - how does that help us?




On 5/18/21 6:16 PM, Steffen Möller wrote:
> Hello,
> 
> I just packaged xpore, which points to
> https://github.com/openvax/pyensembl to get various sorts of sequencing
> data, also complete genomes. I like that and address its packaging now.
> New packages are uploaded to PyPi, not release tagged, but, well, ... .

Nice.

> In my reading this is a way to get test data for various applications of
> ours in a reproducible way. Since this packages only the routines to
> retrieve the data, not the data itself, we cannot use that for package
> autotests. However, we can still use it for testing our workflows if our
> workflow-test-environment is allowed to have internet access, which I
> think it should have.

If internet access is the only bottle-neck, there's a needs-internet
restriction[1] which can get this moving.

[1]: https://people.debian.org/~eriberto/README.package-tests.html

Nilesh

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