Help for optimir autopkgtest needed

[Andreas Tille <andreas@an3as.eu>]

Hi

I updated the packaging of optimir in Git[1] but its autopkgtest
fails with

autopkgtest [22:45:20]: test run-sample-analysis: [-----------------------

#########################
##       OPTIMIR       ##
#########################

Starting workflow for sample S1
 > Starting Library preparation...
Error with system call: Bowtie2 index creation failed: command line = bowtie2-build -f /tmp/autopkgtest.FxuHx2/autopkgtest_tmp/OptimiR_Results_Dir/OptimiR_lib/fasta/optimiR_library.fa /tmp/autopkgtest.FxuHx2/autopkgtest_tmp/OptimiR_Results_Dir/OptimiR_lib/bowtie2_index/optimiR_alignment_library -q
Check that path to Bowtie2, Cutadapt, Samtools are well defined.

autopkgtest [22:45:21]: test run-sample-analysis: -----------------------]
autopkgtest [22:45:21]: test run-sample-analysis:  - - - - - - - - - - results - - - - - - - - - -


I have not spent much time into investigating this issue - may be
somebody might beat me in this.

Kind regards

      Andreas.

[1] https://salsa.debian.org/med-team/optimir

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