Re: Some more stuf for our advent calendar (Bug#976340: jellyfish: Fails to build on some architectures)
Hi,
we have also bug #973431 on jellyfish ...
Kind regards
Andreas.
On Thu, Dec 03, 2020 at 05:32:07PM +0100, Andreas Tille wrote:
> Hi folks,
>
> any idea about this?
>
> Kind regards
>
> Andreas.
>
> ----- Forwarded message from Andreas Tille <tille@debian.org> -----
>
> Date: Thu, 03 Dec 2020 17:06:00 +0100
> From: Andreas Tille <tille@debian.org>
> To: Debian Bug Tracking System <submit@bugs.debian.org>
> Subject: Bug#976340: jellyfish: Fails to build on some architectures
> X-Debian-PR-Message: report 976340
> X-Debian-PR-Package: jellyfish
> X-Debian-PR-Keywords:
> X-Debian-PR-Source: jellyfish
>
> Package: jellyfish
> Version: 2.3.0-7
> Severity: important
>
> Hi,
>
> jellyfish does not build on some architectures ( mips64el [1], mipsel,
> ppc64el and s390x ):
>
> mips64el-linux-gnuabi64-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/jellyfishwEbe4/jellyfish-2.3.0/debian/tmp//usr/include/jellyfish-2.3.0 -I/usr/include/python3.8 -c swig_wrap.cpp -o build/temp.linux-mips64el-3.8/swig_wrap.o -std=c++0x
> swig_wrap.cpp:2826:10: fatal error: jellyfish/mer_dna.hpp: No such file or directory
> 2826 | #include <jellyfish/mer_dna.hpp>
> | ^~~~~~~~~~~~~~~~~~~~~~~
> compilation terminated.
> error: command 'mips64el-linux-gnuabi64-gcc' failed with exit status 1
> E: pybuild pybuild:353: build: plugin distutils failed with: exit code=1: /usr/bin/python3.8 setup.py build build_ext -L/<<PKGBUILDDIR>>/.libs
> I: pybuild base:232: /usr/bin/python3 setup.py build build_ext -L/<<PKGBUILDDIR>>/.libs
> running build
> running build_py
> copying dna_jellyfish.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9_dna_jellyfish/build
> running build_ext
> building '_dna_jellyfish' extension
> creating build/temp.linux-mips64el-3.9
> mips64el-linux-gnuabi64-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/build/jellyfishwEbe4/jellyfish-2.3.0/debian/tmp//usr/include/jellyfish-2.3.0 -I/usr/include/python3.9 -c swig_wrap.cpp -o build/temp.linux-mips64el-3.9/swig_wrap.o -std=c++0x
> swig_wrap.cpp:2826:10: fatal error: jellyfish/mer_dna.hpp: No such file or directory
> 2826 | #include <jellyfish/mer_dna.hpp>
> | ^~~~~~~~~~~~~~~~~~~~~~~
> compilation terminated.
> error: command '/usr/bin/mips64el-linux-gnuabi64-gcc' failed with exit code 1
>
>
> Any idea what might be wrong here?
>
> Kind regards
>
> Andreas.
>
>
> [1] https://buildd.debian.org/status/fetch.php?pkg=jellyfish&arch=mips64el&ver=2.3.0-7&stamp=1607005711&raw=0
>
>
> -- System Information:
> Debian Release: bullseye/sid
> APT prefers unstable
> APT policy: (500, 'unstable'), (500, 'testing'), (50, 'buildd-unstable'), (1, 'experimental')
> Architecture: amd64 (x86_64)
>
> Kernel: Linux 5.9.0-3-amd64 (SMP w/4 CPU threads)
> Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8), LANGUAGE not set
> Shell: /bin/sh linked to /usr/bin/dash
> Init: systemd (via /run/systemd/system)
> LSM: AppArmor: enabled
>
> Versions of packages jellyfish depends on:
> ii libc6 2.31-4
> ii libgcc-s1 10.2.0-19
> ii libhts3 1.11-2
> ii libjellyfish-2.0-2 2.3.0-7
> ii libstdc++6 10.2.0-19
>
> jellyfish recommends no packages.
>
> jellyfish suggests no packages.
>
> -- no debconf information
>
> _______________________________________________
> Debian-med-packaging mailing list
> Debian-med-packaging@alioth-lists.debian.net
> https://alioth-lists.debian.net/cgi-bin/mailman/listinfo/debian-med-packaging
>
> ----- End forwarded message -----
>
> --
> http://fam-tille.de
>
>
--
http://fam-tille.de
Reply to: