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Re: [Help] Re: seqan autopkg test failures triggered by gcc-defaults



tags 966433 pending
tags 966270 pending

thanks

I've got a fixed version of a release candidate of seqan3 3.0.2 in salsa. However it needs an updated range-v3 which has yet to be uploaded: see https://bugs.debian.org/cgi-bin/bugreport.cgi?bug=968053

I can upload the seqan3 3.0.2 release candidate with a code copy of the fixed range-v3, but as no packages build-depend on seqan3 I don't see the rush. Please feel free to correct my mis-understanding.

On Thu, Aug 13, 2020 at 9:39 PM Andreas Tille <andreas@an3as.eu> wrote:
Hi folks,

I tried to reproduce the issue.  When I try to run the test in a chroot I get:

...
   Required dependency:        Range-V3 found.
--   Required dependency:        SDSL found.
--   Optional dependency:        Cereal found.
--   Optional dependency:        Lemon not found.
--   Optional dependency:        ZLIB-1.2.11 found.
--   Optional dependency:        BZip2-1.0.8 found.
--   Optional dependency:        libexecinfo found.
--   SeqAn3 platform.hpp build:  passed.
-- Found SeqAn3: /usr/include..
CMake Error at /tmp/autopkgtest.olJ5KS/autopkgtest_tmp/seqan3-test.cmake:104 (include):
  include could not find load file:

    seqan3_test_component
Call Stack (most recent call first):
  CMakeLists.txt:11 (include)


CMake Error at /tmp/autopkgtest.olJ5KS/autopkgtest_tmp/seqan3-test.cmake:105 (include):
  include could not find load file:

    seqan3_test_files
Call Stack (most recent call first):
  CMakeLists.txt:11 (include)


CMake Error at /tmp/autopkgtest.olJ5KS/autopkgtest_tmp/seqan3-test.cmake:106 (include):
  include could not find load file:

    seqan3_require_ccache
Call Stack (most recent call first):
  CMakeLists.txt:11 (include)


CMake Error at /tmp/autopkgtest.olJ5KS/autopkgtest_tmp/seqan3-test.cmake:107 (include):
  include could not find load file:

    seqan3_require_benchmark
Call Stack (most recent call first):
  CMakeLists.txt:11 (include)


CMake Error at /tmp/autopkgtest.olJ5KS/autopkgtest_tmp/seqan3-test.cmake:108 (include):
  include could not find load file:

    seqan3_require_test
Call Stack (most recent call first):
  CMakeLists.txt:11 (include)


CMake Error at /tmp/autopkgtest.olJ5KS/autopkgtest_tmp/seqan3-test.cmake:109 (include):
  include could not find load file:

    add_subdirectories
Call Stack (most recent call first):
  CMakeLists.txt:11 (include)


CMake Error at CMakeLists.txt:32 (seqan3_require_ccache):
  Unknown CMake command "seqan3_require_ccache".


-- Configuring incomplete, errors occurred!
See also "/tmp/autopkgtest.olJ5KS/autopkgtest_tmp/build_unit/CMakeFiles/CMakeOutput.log".
See also "/tmp/autopkgtest.olJ5KS/autopkgtest_tmp/build_unit/CMakeFiles/CMakeError.log".


For me this looks as if test/seqan3-test.cmake needs some patches.

Kind regards

       Andreas.

--
http://fam-tille.de


--
Michael R. Crusoe

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