Re: libgclib - symbol file - please kindly educate me
Hi Alex, hi Andreas,
This is what I get when I remove the -1
make[1]: Leaving directory '.../med-team/libgclib'
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dpkg-gensymbols: error: some symbols or patterns disappeared in the
symbols file: see diff output below
dpkg-gensymbols: warning: debian/libgclib2/DEBIAN/symbols doesn't match
completely debian/libgclib2.symbols
--- debian/libgclib2.symbols (libgclib2_0.11.10-1_amd64)
+++ dpkg-gensymbolsGWl6pJ 2020-08-09 14:16:35.796448318 +0200
@@ -25,7 +25,7 @@
_Z10g2bit2baseh@Base 0.11.4
_Z10gcdb_allocj@Base 0.11.4
_Z10getFileExtPKc@Base 0.11.4
- _Z10getOvlCodeR6GffObjS0_Rib@Base 0.11.10
+#MISSING: 0.11.10-1# _Z10getOvlCodeR6GffObjS0_Rib@Base 0.11.10
_Z10getOvlCodeR6GffObjS0_Ribi@Base 0.11.10
_Z10parseFloatRPcRf@Base 0.11.4
_Z10replaceStrRPcS_@Base 0.11.4
@@ -79,13 +79,13 @@
_Z14gfo_cmpRefByIDPvS_@Base 0.11.4
_Z14translateCodonPKc@Base 0.11.4
_Z15printEditScriptP12GXEditScript@Base 0.11.4
- _Z15transcriptMatchR6GffObjS0_Ri@Base 0.11.10
+#MISSING: 0.11.10-1# _Z15transcriptMatchR6GffObjS0_Ri@Base 0.11.10
_Z15transcriptMatchR6GffObjS0_Rii@Base 0.11.10
_Z15uint32_pack_bigPcj@Base 0.11.4
_Z16BED_addAttributeP8_IO_FILERiPKcz@Base 0.11.4
_Z16DefLTCompareProcI4GSegEiPvS1_@Base 0.11.4
_Z16gthreads_errExitiPKc@Base 0.11.4
- _Z16singleExonTMatchR6GffObjS0_Ri@Base 0.11.10
+#MISSING: 0.11.10-1# _Z16singleExonTMatchR6GffObjS0_Ri@Base 0.11.10
_Z16singleExonTMatchR6GffObjS0_Rii@Base 0.11.10
_Z17GreedyAlignRegionPKciiS0_iiP16CGreedyAlignDataP8CAlnTrimb@Base 0.11.4
_Z17GreedyAlignRegionPKciiS0_iiiiiP16CGreedyAlignDataP8CAlnTrimb@Base
0.11.4
dh_makeshlibs: error: failing due to earlier errors
make: *** [debian/rules:13: binary] Error 1
dpkg-buildpackage: error: debian/rules binary subprocess returned exit
status 2
?
Steffen
On 09.08.20 07:00, Andreas Tille wrote:
> Hi Steffen,
>
> the patch you get from dh_makeshlibs needs to be edited. You simply
>
> sed -i 's/-1$//' debian/libgclib2.symbols
>
> should do the trick.
>
> Hope this helps
>
> Andreas.
>
> On Sat, Aug 08, 2020 at 11:39:24PM +0200, Steffen Möller wrote:
>> Hello,
>>
>> to get the build process to first not fail and then be quiet, I changed
>> the .symbols file as follows:
>>
>> diff --git a/debian/libgclib2.symbols b/debian/libgclib2.symbols
>> index 6bef43a..aef012c 100644
>> --- a/debian/libgclib2.symbols
>> +++ b/debian/libgclib2.symbols
>> @@ -25,7 +25,8 @@libgclib.so.2 libgclib2 #MINVER#
>> _Z10g2bit2baseh@Base 0.11.4
>> _Z10gcdb_allocj@Base 0.11.4
>> _Z10getFileExtPKc@Base 0.11.4
>> - _Z10getOvlCodeR6GffObjS0_Rib@Base 0.11.4
>> + _Z10getOvlCodeR6GffObjS0_Rib@Base 0.11.10-1
>> + _Z10getOvlCodeR6GffObjS0_Ribi@Base 0.11.10-1
>> _Z10parseFloatRPcRf@Base 0.11.4
>> _Z10replaceStrRPcS_@Base 0.11.4
>> _Z10startsWithPKcS0_@Base 0.11.4
>> @@ -78,12 +79,15 @@libgclib.so.2 libgclib2 #MINVER#
>> _Z14gfo_cmpRefByIDPvS_@Base 0.11.4
>> _Z14translateCodonPKc@Base 0.11.4
>> _Z15printEditScriptP12GXEditScript@Base 0.11.4
>> - _Z15transcriptMatchR6GffObjS0_Ri@Base 0.11.4
>> + _Z15transcriptMatchR6GffObjS0_Ri@Base 0.11.10-1
>> + _Z15transcriptMatchR6GffObjS0_Rii@Base 0.11.10-1
>> _Z15uint32_pack_bigPcj@Base 0.11.4
>> _Z16BED_addAttributeP8_IO_FILERiPKcz@Base 0.11.4
>> _Z16DefLTCompareProcI4GSegEiPvS1_@Base 0.11.4
>> _Z16gthreads_errExitiPKc@Base 0.11.4
>> - _Z16singleExonTMatchR6GffObjS0_Ri@Base 0.11.4
>> + _Z16singleExonTMatchR6GffObjS0_Ri@Base 0.11.10-1
>> + _Z16singleExonTMatchR6GffObjS0_Rii@Base 0.11.10-1
>> + _Z15transcriptMatchR6GffObjS0_Rii@Base 0.11.10-1
>> _Z17GreedyAlignRegionPKciiS0_iiP16CGreedyAlignDataP8CAlnTrimb@Base 0.11.4
>> _Z17GreedyAlignRegionPKciiS0_iiiiiP16CGreedyAlignDataP8CAlnTrimb@Base
>> 0.11.4
>> _Z17gcvt_endian_setupv@Base 0.11.4
>>
>> I have no idea why there is now a -1 attached to the version. I just
>> know that it does not work without it.
>>
>> Can I upload as is?
>>
>> Best,
>>
>> Steffen
>>
>>
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