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Re: Autopkgtest failure with new version of kaptive - may be related to new version of biopython



Aaron M. Ucko, on 2020-09-13 22:46:44 -0400:
> Étienne Mollier <etienne.mollier@mailoo.org> writes:
> 
> > My kernel traps a general protection fault in libblast.so during
> > tblastn execution:
> 
> There's a new upstream release (2.10.1) that might conceivably help
> here, but as noted in another thread, the update won't be entirely
> trivial -- there's at least one x86ism I'll need to conditionalize
> appropriately to avoid FTBFS errors on other architectures.
> 

Given the rather random behavior once multiple threads are in
play, I understand that tblastn issue might be most delicate.
I'm trying to wrap up a proper reproducer for a bug report, in
order to document the issue at best.

Hope it will help,
Kind Regards,
-- 
Étienne Mollier <etienne.mollier@mailoo.org>
Old rsa/3072: 5ab1 4edf 63bb ccff 8b54  2fa9 59da 56fe fff3 882d
New rsa/4096: 8f91 b227 c7d6 f2b1 948c  8236 793c f67e 8f0d 11da
Sent from /dev/pts/2, please excuse my verbosity.

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