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Re: networkx 2.5 Re: Falcon -> misc updates



Hi Steffen,

I finally found the time to check falcon and was running routine-update
first.  I also tried to simplify dh_auto_test.  However, I think the
code that is executed should be perfectly the same as before.
Unfortunately I get:

...
                        if (self._strict and
                            (sectname, optname) in elements_added):
>                           raise DuplicateOptionError(sectname, optname,
                                                       fpname, lineno)
E                           configparser.DuplicateOptionError: While reading from '<???>' [line 13]: option 'job_queue' in section 'General' already exists

/usr/lib/python3.8/configparser.py:1093: DuplicateOptionError
=============================== warnings summary ===============================
falcon_kit/mains/consensus_task.py:15
  /build/falcon-2.1.4/FALCON/falcon_kit/mains/consensus_task.py:15: DeprecationWarning: invalid escape sequence \d
    """Return opts sans the regexp match, and proper nproc.

falcon_kit/FastaReader.py:29
  /build/falcon-2.1.4/FALCON/falcon_kit/FastaReader.py:29: DeprecationWarning: invalid escape sequence \s
    nameParts = re.split('\s', name, maxsplit=1)

-- Docs: https://docs.pytest.org/en/latest/warnings.html
----------- generated xml file: /build/falcon-2.1.4/FALCON/test.xml ------------
============================ slowest test durations ============================
0.02s call     test/test_util_io.py::test_io_se1331
0.01s call     test/test_functional.py::test_Readers
0.01s call     test/test_util_io.py::test_str_type[CapturedProcessReaderContext]

(0.00 durations hidden.  Use -vv to show these durations.)
=============== 17 failed, 79 passed, 2 warnings in 1.68 seconds ===============
{('.1', '.1'): 'daligner -v -w1 -h1 -t50 -H2000 -e0.99 -l1 -s1000 -P=. -mdust '
               'raw_reads.1 raw_reads.1\n'
               'LAcheck -v raw_reads *.las\n',
 ('.2', '.1', '.2'): 'daligner -v -w1 -h1 -t50 -H2000 -e0.99 -l1 -s1000 -P=. '
                     '-mdust raw_reads.2 raw_reads.1 raw_reads.2\n'
                     'LAcheck -v raw_reads *.las\n'}[3735998]'echo "hi\nthere"'
[3735998]'echo "hi\nthere"'
[3735998]'seq 20000'
[3735998]'seq 2'
[3735998]'seq 2'
make[2]: *** [makefile:25: test] Error 1


I admit I have no idea how to fix this.

Kind regards

       Andreas.


On Thu, Aug 27, 2020 at 07:28:48PM +0200, Steffen Möller wrote:
> Networkx 2.5 I just also uploaded. What is kind of unexpected is
> that in debian/tmp the file are installed to the subdirectory
> /usr..python3.8
> while the package receives the same in the python3 subdirectory.
> 
> What should be done to address this? Manually rename the folder in
> debian/tmp?
> 
> Many thanks!
> 
> Steffen
> 
> On 27.08.20 19:16, Steffen Möller wrote:
> > Hello,
> >
> > with python3-networkx 2.5 the previously reported FTBFS is done. I am
> > just cowbuilding that monster again and will then team-upload.
> >
> > Concerning falcon I transitioned everything (except for the module
> > declaration) to Python3. The nim code is now compatible with version 1.2
> > of nim. Especially that strings are no longer allowed to be nil rather
> > bit the code hard. I just pushed this all, so I don't lose these
> > changes, and also happily pass the finalisation of the package in other
> > hands. Should be these Python modules only ...
> >
> > What we should really do so is to feed these changes back to upstream.
> >
> > Steffen
> >
> 
> 

-- 
http://fam-tille.de


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