Re: undefined vdb_mbed functions in ncbi-vdb2 library - ran out of ideas
Andreas Tille <tille@debian.org> writes:
> Hmmmm, I'm not sure whether vdb came with the original. I remember I
> had to patch some stuff (specifically droping the 'vbd_' prefix). But
> I do not remember and I have no spare cycles currently to dive into
> this.
The git HEAD of ncbi-vdb looks mostly good to go at this point, and
AFAICT simply needs to account for the fact that sra-sdk needs both
interfaces/vfs/services-priv.h and libs/vfs/services-priv.h, neither of
which can substitute for the other. I'd suggest installing the latter
as services-priv-internal.h and patching sra-sdk's
tools/util/validate-names4.c accordingly.
Meanwhile, it looks like sra-sdk's latest "2.10.4+dfsg" upstream tree
wound up as an accidental copy of ncbi-vdb.
--
Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org)
http://www.mit.edu/~amu/ | http://stuff.mit.edu/cgi/finger/?amu@monk.mit.edu
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