Re: ncbi-vdb 2.10.3 broken api leading to several rebuild issues
On Fri, Feb 28, 2020 at 09:25:09AM +0100, olivier sallou wrote:
> Hi,
> I've seen several bug reports raised after debian archive rebuild [0],
> seems several are linked to ncbi-vdb.
> Packages failed against v2.10 uploaded this month by andreas.
>
> Seems this release broke ABI getting many undefined symbols errors.
> Don't think we'll be able to patch this (would need to know what is
> needed and map to new lib).
>
> One solution would be to remove v2.10.3 and upload it as new lib ncbi-
> vdbXX ??
>
>
> [0] Bug#952623: sra-sdk, Bug#952627: skesa , ..?
Usually sra-sdk and ncbi-vdb need to match each other. Upstream has
uscan: Newest version of sra-sdk on remote site is 2.10.4, local version is 2.10.2+dfsg
(mangled local version is 2.10.2)
uscan: => Newer package available from
https://github.com/ncbi/sra-tools/archive/2.10.4.tar.gz
May be the easiest way to deal with this is upgrading sra-sdk as well.
I'm sorry, but I have no time to do this currently. In any case we
should try to prevent issues like this in future by adding some
SOVERSION to the package name.
Kind regards
Andreas.
--
http://fam-tille.de
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