Re: Project idea: port GKL to non-x86
For GATK depending on GKL, I found an interesting page about building
GATK on ARM.
https://gatkforums.broadinstitute.org/gatk/discussion/9971/gatk4-beta1-problem-some-questions-about-bwa-faga-pipeline-in-gatk4-beta1
> We use GATK4-beta1 in ARM,and have several questions about it:
Jun
On Sat, Feb 8, 2020 at 2:53 PM Michael Crusoe <michael.crusoe@gmail.com> wrote:
>
> https://github.com/Intel-HLS/GKL
> A Java wrapper around an Intel optimized implementations of PairHMM, Smith-Waterman, and DEFLATE.
>
> Uses SIMD intrinsics and assembly.
>
> At https://salsa.debian.org/misterc-guest/gkl/tree/experimental/simde is a fork using the SIMD Everywhere library, but I lack the expertise to produce source versions of the many assembler only routines.
>
> Any suggestions / contributions?
>
> --
> Michael R. Crusoe
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