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Project idea: port GKL to non-x86
To
: Debian Med Project List <
debian-med@lists.debian.org
>
Cc
: Jun Aruga <
jaruga@redhat.com
>, Evan Nemerson <
evan@nemerson.com
>
Subject
: Project idea: port GKL to non-x86
From
: Michael Crusoe <
michael.crusoe@gmail.com
>
Date
: Sat, 8 Feb 2020 14:53:35 +0100
Message-id
: <
[🔎]
CAD=WrcLsbxMMVqBhv2P0a_0_yOK_pRi1c=EpvyBhSX7GOA=d_Q@mail.gmail.com
>
https://github.com/Intel-HLS/GKL
A Java wrapper around an Intel optimized implementations of PairHMM, Smith-Waterman, and DEFLATE.
Uses SIMD intrinsics and assembly.
At
https://salsa.debian.org/misterc-guest/gkl/tree/experimental/simde
is a fork using the SIMD Everywhere library, but I lack the expertise to produce source versions of the many assembler only routines.
Any suggestions / contributions?
--
Michael R. Crusoe
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