Re: IGV update - any takers?
On 11/13/19 1:42 PM, Steffen Möller wrote:
> Hello,
>
> One of the packages that Debian should really shine with is IGV - it is
> used throughout the world to inspect RNAseq data. And the ones running
> IGV are not the ones who ran the analysis, so there should be tons of
> folks out there using it who are not already installing conda in
> routine. Admittedly, those will mostly be Windows/MacOS users, but hey,
> also some Debianers. Popcon only lists one installation. Something must
> be wrong. We are a bit behind with its version (2.4) with 2.7 being the
> latest, but also conda
users may use online web version, and is also integrated with Galaxy it
seems
> only has 2.5 to offer, so that is likely not the
> reason.
>
> I just found it to be in conflict with R libraries I had on my system
> because of dependencies on different versions of libhdf-dev - somewhat
> unexpected.
could you be more explicit on issue?
igv depends on libjhdf5 , if there are isues with libhdf might be issue
with libjhdf5 itself?
> The changelog found Sascha, Andreas and Olivier as past
> active maintainers. Do you have further insights for me? And - is IGV a
> reasonable package to be backported?
>
> Regards,
> Steffen
>
--
Olivier Sallou
Univ Rennes, Inria, CNRS, IRISA
Irisa, Campus de Beaulieu
F-35042 RENNES - FRANCE
Tel: 02.99.84.71.95
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