Hello Andreas, > UnicodeDecodeError: 'utf-8' codec can't decode byte 0x89 in position 0: invalid start byte > test KO > autopkgtest [06:51:22]: test run-unit-test: -----------------------] > autopkgtest [06:51:22]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - > run-unit-test FAIL non-zero exit status 1 > autopkgtest [06:51:22]: @@@@@@@@@@@@@@@@@@@@ summary > run-unit-test FAIL non-zero exit status 1 This is strange. I don't understand why I can't seem to get the error you are getting (both on my buster workstation and within a sid environment). Maybe enforcing as string in recent commit might work but I am not sure why it works for me. I guess I will try to find some solution or in the worst case convert this into a bash file to diff two files that have already been processed by the lambda function. > Ahhh, well, you had > > commit 77ff787eb810742eac574d1a9439f5dbe62acec3 > Author: Shayan Doust <hello@shayandoust.me> > Date: Sun Sep 22 23:41:24 2019 +0100 > > Patch to eliminate the need for contrib fonts package > > and I even have a local commit "Upload to new" - but this never > happened. I've probably build it at home and forgot to dput. Thanks > for the ping. It might happen that my network connection is to weak to > upload before Sunday evening or Monday. Sorry for the delay - please > ping again if you do not see anything until Tuesday. No worries. The size can be a bit of a pain to handle :). Kind regards, Shayan Doust On 27/09/2019 08:21, Andreas Tille wrote: > Hi Shayan, > > On Thu, Sep 26, 2019 at 07:47:18PM +0100, Shayan Doust wrote: >> I believe bcalm[1] is done. Hopefully not missing any dependency. > > Thanks for working on this. Build-Depends cmake was missing - fixed. > > ... > Gluing partition 140 (size: 0 MB) 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > Gluing partition 160 (size: 0 MB) 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > Gluing partition 180 (size: 0 MB) 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > Gluing partition 200 (size: 0 MB) 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > Gluing partition 220 (size: 0 MB) 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > Gluing partition 240 (size: 0 MB) 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > Gluing partition 260 (size: 0 MB) 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > Gluing partition 280 (size: 0 MB) 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > Gluing partition 300 (size: 0 MB) 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > Gluing partition 320 (size: 0 MB) 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > Gluing partition 340 (size: 0 MB) 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > Gluing partition 360 (size: 0 MB) 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > Gluing partition 380 (size: 0 MB) 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > Gluing partition 400 (size: 0 MB) 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > Gluing partition 420 (size: 0 MB) 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > Gluing partition 440 (size: 0 MB) 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > Gluing partition 460 (size: 0 MB) 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > Gluing partition 480 (size: 0 MB) 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > Gluing partition 500 (size: 0 MB) 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > end 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > debug: not deleting glue files > Finding links between unitigs 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > step 1 pass 0 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > step 2 (0kmers/0extremities) 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > step 1 pass 1 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > step 2 (0kmers/0extremities) 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > step 1 pass 2 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > step 2 (0kmers/0extremities) 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > step 1 pass 3 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > step 2 (0kmers/0extremities) 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > step 1 pass 4 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > step 2 (2kmers/2extremities) 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > step 1 pass 5 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > step 2 (0kmers/0extremities) 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > step 1 pass 6 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > step 2 (0kmers/0extremities) 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > step 1 pass 7 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > step 2 (0kmers/0extremities) 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > gathering links from disk 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > Done finding links between unitigs 06:51:22 memory [current, maxRSS]: [ 51, 98] MB > Traceback (most recent call last): > File "compare_fasta.py", line 20, in <module> > s1 = read_seqs(fasta1) > File "compare_fasta.py", line 15, in read_seqs > for line in open(fasta): > File "/usr/lib/python3.7/codecs.py", line 322, in decode > (result, consumed) = self._buffer_decode(data, self.errors, final) > UnicodeDecodeError: 'utf-8' codec can't decode byte 0x89 in position 0: invalid start byte > test KO > autopkgtest [06:51:22]: test run-unit-test: -----------------------] > autopkgtest [06:51:22]: test run-unit-test: - - - - - - - - - - results - - - - - - - - - - > run-unit-test FAIL non-zero exit status 1 > autopkgtest [06:51:22]: @@@@@@@@@@@@@@@@@@@@ summary > run-unit-test FAIL non-zero exit status 1 > > > I have forced "export LC_ALL=C.UTF-8" in run-unit-tests - but this does not change anything > (BTW, that's my most hatet Python error message - I've seen it sooooo frequently :-( ) > >> I also believe FAST is in the pipeline to upload seeing how some issues >> were rectified with fonts. > > Ahhh, well, you had > > commit 77ff787eb810742eac574d1a9439f5dbe62acec3 > Author: Shayan Doust <hello@shayandoust.me> > Date: Sun Sep 22 23:41:24 2019 +0100 > > Patch to eliminate the need for contrib fonts package > > and I even have a local commit "Upload to new" - but this never > happened. I've probably build it at home and forgot to dput. Thanks > for the ping. It might happen that my network connection is to weak to > upload before Sunday evening or Monday. Sorry for the delay - please > ping again if you do not see anything until Tuesday. > >> I also want to personally refrain from >> anymore new packages for a while because bugs list needs some attention >> which I will certainly give it overall. > > Perfectly fine. Any contribution is more than welcome - there is no > priotity of adding new packages over enhancing the quality of the > existing ones. > > Thanks a lot for your work as always > > Andreas. > >> [1]: https://salsa.debian.org/med-team/bcalm > >
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