Am 27.07.2019 um 20:09 schrieb Andreas Tille:
On Sat, Jul 27, 2019 at 07:40:45PM +0200, Steffen Möller wrote:dpkg: error processing archive /var/cache/apt/archives/exonerate_2.4.0-4_amd64.deb (--unpack): trying to overwrite '/usr/bin/fastaexplode', which is also in package biobambam2 2.0.95-1 Grummel. Does anybody have any insights on what is going on?Just guessing: You have some local package biobambam2 with a file name conflict?
This one https://salsa.debian.org/med-team/biobambam2 I lack insights thought if the two are doing the very same thing or if this is some coincidence of some sort. We did not have too many conflicts without our community, yet. A stackoverflow entry points to the exonerate package: https://bioinformatics.stackexchange.com/questions/7326/downloading-fasta-for-each-chromosome-of-a-complete-genome I am tempted to put fastaexplode into a separate package . Does anybody by chance know if https://github.com/gt1/biobambam2/blob/master/src/programs/fastaexplode.cpp is doing the same thing? I'd otherwise contact upstream about it. Steffen