Re: problem with Abyss

Dear Andreas and Tony

Thank you very much for your kind help, Now Abyss is cowing well with multiple threads. I have tested it with np=16 and the run was successfully.

Best regards

Adly

Adly Abd-Alla (Ph.D.)
Professor of Entomology
Molecular Biologist
Insect Pest Control Laboratory (IPCL)
FAO/IAEA Agriculture and Biotechnology Laboratory
International Atomic Energy Agency, Vienna Austria
Tel: +431260028425, Fax: +4312600447

On Tuesday, March 5, 2019, 3:25:07 AM GMT+1, Tony Travis <tony.travis@minke-informatics.co.uk> wrote:

On 27/02/2019 08:30, Andreas Tille wrote:
> [...]
> (make sure you wait until abyss_2.1.5-7~bpo9+1 is available there - the
> page is not yet updated at the time of writing!) and installing manually
> on an Ubuntu system might work (but its not tested since I have no
> easy access to an Ubuntu machine).

Hi, Andreas.

I've just compiled a .deb for Adly under Ubuntu-MATE 18.04 LTS with one
minor change to debian/control:

> Build Abyss package from source manually
>
> # download from http://cdn-fastly.deb.debian.org/debian/pool/main/a/abyss/
> ajt@beluga:~/src/Abyss$
> ls
> abyss_2.1.5-7~bpo9+1.debian.tar.xz abyss_2.1.5-7~bpo9+1.dsc abyss_2.1.5.orig.tar.gz
>
> # extract sources
> dpkg-source -x abyss_2.1.5-7~bpo9+1.dsc
> cd abyss-2.1.5
>
> # change "debhelper" dependency from 12~ to 11~
> vim debian/control
> ...
> Build-Depends: debhelper (>= 11~),
> ...
>
> # build binary package
> debuild
> ls ..
> abyss-2.1.5 abyss_2.1.5-7~bpo9+1_amd64.changes abyss_2.1.5-7~bpo9+1.dsc
> abyss_2.1.5-7~bpo9+1_amd64.build abyss_2.1.5-7~bpo9+1_amd64.deb abyss_2.1.5.orig.tar.gz
> abyss_2.1.5-7~bpo9+1_amd64.buildinfo abyss_2.1.5-7~bpo9+1.debian.tar.xz abyss-dbgsym_2.1.5-7~bpo9+1_amd64.ddeb
>
>
> # install binary package
> sudo gdebi ../abyss_2.1.5-7~bpo9+1_amd64.deb
> apt policy abyss
> abyss:
> Installed: 2.1.5-7~bpo9+1
> Candidate: 2.1.5-7~bpo9+1
> Version table:
> *** 2.1.5-7~bpo9+1 100
> 100 /var/lib/dpkg/status
> 2.0.2-3 500
> 500 http://gb.archive.ubuntu.com/ubuntu bionic/multiverse amd64 Packages

Thanks for your help,

Tony.

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