Re: Should lambda-align v2 replace v1 or be its own Debian package?

[Sascha Steinbiss <satta@debian.org>]

Hi Michael,

[...[
> Other than the lack of full test suite that we had with v1.0.x [1], I
> think this is ready for sponsorship for the NEW queue.

Hmm, but the rest of the tests (the ones currently run in your package
on salsa) are supposed to succeed? They fail for me:

[...]
   debian/rules override_dh_auto_test
make[1]: Entering directory '/build/lambda-align2-2.0.0'
for md5 in debian/*.md5sums; do gzip --keep ${md5}; done
cp --backup debian/*md5sums.gz tests/
cd build/tests && ctest . -j8 -I 1,10
Test project /build/lambda-align2-2.0.0/build/tests
      Start  1: test_mkindex_blastn_sa
      Start  2: test_mkindex_blastn_fm
      Start  3: test_mkindex_blastp_sa
      Start  4: test_mkindex_blastp_fm
      Start  5: test_mkindex_blastx_sa
      Start  6: test_mkindex_blastx_fm
      Start  7: test_mkindex_tblastn_sa
      Start  8: test_mkindex_tblastn_fm
 1/10 Test  #4: test_mkindex_blastp_fm ...........***Failed    0.48 sec
      Start  9: test_mkindex_tblastx_sa
 2/10 Test  #3: test_mkindex_blastp_sa ...........***Failed    0.49 sec
      Start 10: test_mkindex_tblastx_fm
 3/10 Test  #6: test_mkindex_blastx_fm ...........***Failed    0.65 sec
 4/10 Test  #5: test_mkindex_blastx_sa ...........***Failed    0.72 sec
 5/10 Test  #1: test_mkindex_blastn_sa ...........***Failed    1.23 sec
 6/10 Test  #2: test_mkindex_blastn_fm ...........***Failed    1.25 sec
 7/10 Test  #8: test_mkindex_tblastn_fm ..........***Failed    1.26 sec
 8/10 Test  #7: test_mkindex_tblastn_sa ..........***Failed    1.29 sec
 9/10 Test  #9: test_mkindex_tblastx_sa ..........***Failed    0.83 sec
10/10 Test #10: test_mkindex_tblastx_fm ..........***Failed    0.82 sec

0% tests passed, 10 tests failed out of 10

Total Test time (real) =   1.31 sec

The following tests FAILED:
	  1 - test_mkindex_blastn_sa (Failed)
	  2 - test_mkindex_blastn_fm (Failed)
	  3 - test_mkindex_blastp_sa (Failed)
	  4 - test_mkindex_blastp_fm (Failed)
	  5 - test_mkindex_blastx_sa (Failed)
	  6 - test_mkindex_blastx_fm (Failed)
	  7 - test_mkindex_tblastn_sa (Failed)
	  8 - test_mkindex_tblastn_fm (Failed)
	  9 - test_mkindex_tblastx_sa (Failed)
	 10 - test_mkindex_tblastx_fm (Failed)
Errors while running CTest
[...]

Any ideas?

Cheers
Sascha