Re: "med.bio" under Ubuntu-MATE 18.04 LTS
On 28/05/2018 15:03, Andreas Tille wrote:
> [...]
> I admit I tried to reproduce the issue but failed. I've applied the
> patch anyway and just uploaded
>
> " 2.7.6-1
>
> Tony, thanks for the patch and the detailed explanation (which I've
> added to the quilt patch). Please let us know if there are any
> remaining issues.
Hi, Andreas.
I ran a QIIME2 workshop in Vienna using an alpha version of Bio-Linux 9
based on Ubuntu-MATE 18.04 LTS + med-bio, med-bio-dev and Bioconda plus
a few other packages including x2goserver. Everything worked well, but
your update to "metaphlan2" is not available in the Ubuntu repository:
> root@beluga:~# lsb_release -d
> Description: Ubuntu 18.04.1 LTS
> root@beluga:~# apt policy metaphlan2
> metaphlan2:
> Installed: 2.7.5-2
> Candidate: 2.7.5-2
> Version table:
> *** 2.7.5-2 100
> 100 /var/lib/dpkg/status
> 2.7.5-1 500
> 500 http://gb.archive.ubuntu.com/ubuntu bionic/universe amd64 Packages
> 500 http://gb.archive.ubuntu.com/ubuntu bionic/universe i386 Packages
> root@beluga:~# cat /etc/debian_version
> buster/sid
Any idea if/when your "metaphlan2" update will arrive in buster/sid?
For the moment, I'm installing my patched deb to complete any "med-bio"
installations I do under Ubuntu 18.04 LTS. I did several installations
while I was in Vienna. I've done many more in Milan and elsewhere too.
Thanks again for all the effort you and the Debian-Med team have put
into making the 'missing' Bio-Linux packages available in "med-bio".
Bye,
Tony.
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