Re: Autopkgtest for SOAPdenovo

To: Andreas Tille <andreas@an3as.eu>
Cc: Debian Med Project List <debian-med@lists.debian.org>
Subject: Re: Autopkgtest for SOAPdenovo
From: Liubov Chuprikova <chuprikovalv@gmail.com>
Date: Fri, 8 Jun 2018 21:06:42 +0200
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References: <[🔎] CAFssYRPjOmWACo3V4y7j0pnpzz0uXLHOG3G9nU4BPdYjN42+ag@mail.gmail.com> <[🔎] 20180608150046.u46a3k4mc7ejblnh@an3as.eu> <[🔎] CAFssYROw8BY_cqjbRurCNK0eR+voKUgrwhL33px_F6-kCPYihQ@mail.gmail.com> <[🔎] CAFssYROWT8HwoF29G_Lkq7L61db4z=eG=F=WLaxS_Ck8sBqSmQ@mail.gmail.com>

On Fri, 8 Jun 2018 at 18:59 Liubov Chuprikova <chuprikovalv@gmail.com> wrote:

On Fri, 8 Jun 2018 at 17:37 Liubov Chuprikova <chuprikovalv@gmail.com> wrote:

Could you please take a look at my commits to soapdenovo? I think I have finished with it.

Sorry, Andreas, but I was wrong! I forgot to test other two binaries. Give me, please, a little more time to finish!

I am stuck with one of the binaries: soapdenovo-127mer. Even on a small data set it requires more than 3GB of memory to run. Is it acceptable for an autopkgtest to allocate such amount of memory?

Thank you,

Liubov

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Follow-Ups:
- Re: Autopkgtest for SOAPdenovo
  - From: Andreas Tille <andreas@an3as.eu>

References:
- Autopkgtest for SOAPdenovo
  - From: Liubov Chuprikova <chuprikovalv@gmail.com>
- Re: Autopkgtest for SOAPdenovo
  - From: Andreas Tille <andreas@an3as.eu>
- Re: Autopkgtest for SOAPdenovo
  - From: Liubov Chuprikova <chuprikovalv@gmail.com>
- Re: Autopkgtest for SOAPdenovo
  - From: Liubov Chuprikova <chuprikovalv@gmail.com>

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