Help for new version of Jellyfish needed
Hi,
I fiddled around a bit with the swig Python support since the new
version of jellyfish (2.2.10) needs some tweaks and did not build
out of the box with the old build options any more. Unfortunately
I failed. At first the file
swig/python/dna_jellyfish.py
was not created. I was able to fix this. Now I'm running into
...
/bin/bash ./libtool --tag=CXX --mode=link g++ -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/build/jellyfish-2.2.10=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -Wl,-z,relro -Wl,-z,now -o bin/jellyfish sub_commands/jellyfish.o sub_commands/count_main.o sub_commands/info_main.o sub_commands/dump_main.o sub_commands/histo_main.o sub_commands/stats_main.o sub_commands/merge_main.o sub_commands/bc_main.o sub_commands/query_main.o sub_commands/cite_main.o sub_commands/mem_main.o jellyfish/merge_files.o libjellyfish-2.0.la
libtool: link: g++ -Werror -std=c++11 -g -O2 -fdebug-prefix-map=/build/jellyfish-2.2.10=. -fstack-protector-strong -Wformat -Werror=format-security -pthread -Wl,-z -Wl,relro -Wl,-z -Wl,now -o bin/.libs/jellyfish sub_commands/jellyfish.o sub_commands/count_main.o sub_commands/info_main.o sub_commands/dump_main.o sub_commands/histo_main.o sub_commands/stats_main.o sub_commands/merge_main.o sub_commands/bc_main.o sub_commands/query_main.o sub_commands/cite_main.o sub_commands/mem_main.o jellyfish/merge_files.o ./.libs/libjellyfish-2.0.so -pthread
/usr/bin/python -c 'import py_compile, sys; py_compile.compile(sys.argv[1], sys.argv[2])' swig/python/dna_jellyfish.py swig/python/__init__.pyc
make[3]: *** No rule to make target 'swig/python/jellyfish.py', needed by 'all-am'. Stop.
...
I have no idea about swig at all and any help to build the package
as it is in Git[1] would be welcome.
Kind regards
Andreas.
[1] https://salsa.debian.org/med-team/jellyfish
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http://fam-tille.de
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