Re: picard-tools: missing deps
Hi Olivier,
On Wed, Apr 25, 2018 at 09:59:47AM +0200, Olivier Sallou wrote:
> those libs don't seem to be in debian.
> after quick and dirty packaging of missing deps (locally), there are
> still other issues.
> Jar packaging needs other deps (may try *simple* jar like was done
> before) but more annoying needs a specific jar patched from an other source:
>
> org.broadinstitute:google-cloud-nio-GATK4-custom-patch:0.20.4-alpha-GCS-RETRY-FIX
>
> can't find related sources, only generated jar (and rebuilding it seems
> we will again need additional deps... :-( )
> i have contacted picard team to get more info on this dependency [0]
Thanks a lot for your effort in this. Please let me know if you need
some help in polishing your local missing deps (just push and ping me).
Since I'm reading GATK4: Packaging this is also some quite interesting
task. Any volunteer for this?
Kind regards
Andreas.
> [0] https://github.com/broadinstitute/picard/issues/1164
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