I had a look to fix latest picard-tools and found there are missing deps:
> Could not resolve com.intel.gkl:gkl:0.8.2.
Required by:
project :
> No cached version of com.intel.gkl:gkl:0.8.2 available for offline mode.
> No cached version of com.intel.gkl:gkl:0.8.2 available for offline mode.
> Could not resolve org.broadinstitute:barclay:2.0.0.
Required by:
project :
> No cached version of org.broadinstitute:barclay:2.0.0 available for offline mode.
> No cached version of org.broadinstitute:barclay:2.0.0 available for offline mode.
those libs don't seem to be in debian.
To avoid javadoc errors I found at first when building package, I locally updated build.gradle to remove all refs to javadocJDKFiles. This may not be valid when going to doc task, but wanted at least test to see if compilation etc was ok....
Olivier