Re: December: tophat

[Fabian Klötzl <kloetzl@evolbio.mpg.de>]

On 06.12.2017 16:20, Andreas Tille wrote:
> Hi Fabian,
> 
> On Wed, Dec 06, 2017 at 03:53:09PM +0100, Fabian Klötzl wrote:
>> On 04.12.2017 17:33, Andreas Tille wrote:
>>>
>>> Thanks to the test suite we now know that the issue is not solved yet:
>>>
>>> $ sh run-unit-test 
>>
>> That should be done with my recent commit; The new samtools version used
>> a different set of arguments.
> 
> I repackaged the upstream tarball to get really rid of the code copy and
> did some according polishing as well.  I also added a versioned
> Dependency from samtools.  It seems we need this versioning since if I
> install the package on a stretch system the run-unit-test script fails.
> Since we have samtools 1.3 on stretch it seems to be the reason for the
> failure.

I was testing on sid with samtools 1.5. So yeah, versioning seems like
the way to go.