Re: [Help] Failed to upgrade bcftools to version 1.5

[Afif Elghraoui <afif@debian.org>]

Hi, Graham,

[adding ticket log to Cc]

على الإثنين  7 آب 2017 ‫10:40، كتب Graham Inggs:
> Python-pysam 0.11.2.2+ds-3 migrated to testing on 2017-08-06, completing 
> the htslib/samtools/bcftools 1.4.1 transition.
> 
> Now htslib 1.5-1 and samtools 1.5-1 have been uploaded and python-pysam 
> FTBFS again (see #871083):
> ValueError: versions of pysam.samtools and samtools differ: 1.4.1 != 1.5
> 
> Should RC bugs be filed against htslib and samtools to prevent them from 
> migrating to testing?

samtools/bcftools/htslib/pysam generally need to be in sync, regardless
of soname changes. I'm currently preparing bcftools 1.5, but there's
still no corresponding pysam release.

Maybe RC bugs are a good idea. They probably should have been uploaded
to experimental to begin with until pysam caught up. I'll upload
bcftools there once I'm done barring any objection.

Thanks and regards
Afif

-- 
Afif Elghraoui | عفيف الغراوي
http://afif.ghraoui.name