[Date Prev][Date Next] [Thread Prev][Thread Next] [Date Index] [Thread Index]

Re: [Help] Failed to upgrade bcftools to version 1.5



On 24/07/2017 06:12, Afif Elghraoui wrote:
I was under the impression that htslib 1.5, required for bcftools 1.5,
has a soname bump. There is no pysam release yet to wrap htslib 1.5, so
I think upgrading bcftools/samtools/htslib right now to 1.5 will just
make it impossible to use pysam until a new release comes out, right?

Python-pysam 0.11.2.2+ds-3 migrated to testing on 2017-08-06, completing the htslib/samtools/bcftools 1.4.1 transition.

Now htslib 1.5-1 and samtools 1.5-1 have been uploaded and python-pysam FTBFS again (see #871083):
ValueError: versions of pysam.samtools and samtools differ: 1.4.1 != 1.5

Should RC bugs be filed against htslib and samtools to prevent them from migrating to testing?


Reply to: