Hi Andreas, On 17:58 09/01, Andreas Tille wrote: > Hi Kevin, > > I noticed that there is a new version of snakemake and I updated the Git > repository accordingly. Thanks, and sorry for not getting back to you till now. > Strangely enough I had to inject a hack to run the build time tests. Since > there is no such binary bin/snakemake any more inside the upstream tarball I > injected what's ending up inside the binary package via a quilt patch. This > seems to work but is so hackish that I would like to let another pair of > eyeballs having a look whether there might be a more appropriate solution. I've checked what you do, and AFAICT all is well. So long as the patch-introduced bin/snakemake is never installed, I think all is well. One note on the patch: that's an auto-generated binary you've patched in, which has a bunch of stuff hard-coded (versions etc). This will break with the next version, and be a real pain to keep the patch up to date. I've pushed a functionally equivalent but more general patch, which should be better. > Feel free to upload once you are happy with the package - any tests with real > data are welcome for sure. All seems well with a simple workflow of mine, so it *should* all work fine. Fingers crossed! Happy sprinting all! Cheers, K --- Kevin Murray
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