Hi,
On Fri, Nov 11, 2016 at 08:34:15PM +0200, Çağrı ULAŞ wrote:
> Working on autopkgtest but I have issues with deepnano. There are no man
> pages or example files I found.
Did you tried -h/--help options that might be used with help2man?
> Only bitbucket page have a basic usage but
> this is more different from classic alignment tools.
If there is no chance with help2man you might try to find some simple
introduction how to write manpages (or check out a simple manpage on the
Debian system) and feed in the content of the bitbucket page.
> I try to run with some
> .npz datas in nets_data directory. But give me an error 'Unable to open
> file (File signature not found)'. Anyway, .npz datas are numpy's
> uncompressed files according to scipy's docs. 'OMP_NUM_THREADS=1
> deepnano_basecall' command uses fast5 files. Cant get any fast5 file. Where
> can I get them, any ideas?
* Asking upstream
* Asking Canberk how he found example files
* Hoping for hints of other readers here
Sorry, I can not help myself since I'm not working as bioinformatican.
> Nowadays, lots of work on me at university but I'll try to communicate more
> often.
OK.