Re: Help needed to package manta which needs samtools >= 1.2 and libbam.a
I forgot to mention that you need to build and install
https://anonscm.debian.org/git/debian-med/python-pyflow.git
first ...
On Tue, Nov 15, 2016 at 05:14:33PM +0100, Andreas Tille wrote:
> Hi folks,
>
> I have injected manta[1] into packaging Git. Upstream contains several
> projects as tar.bz2 which are packaged for Debian and rebuilds these in
> the packaging process. I tried to tweak the cmake input files to
> reference the Debian packaged alternatives. I was stumbling about
> samtools (manta upstream contains version 1.2 - we just have 1.3 which
> might be a source of failure due to incompatibilities but lets ignore
> this for the moment). The cmake build system needs a libbam.a which is
> only build by the legacy libbam-dev 0.1.19. I wonder how we can get
> a libbam.a from recent samtools - or is there any other solution to
> build manta?
>
> Here is the error message the current builds ends with:
>
> ...
> make[3]: *** No rule to make target '/libhts.a', needed by 'src/c++/lib/applications/GenerateSVCandidates/test/manta_unit_test_GenerateSVCandidates'. Stop.
> make[3]: Leaving directory '/build/manta-1.0.2+dfsg/obj-x86_64-linux-gnu'
> CMakeFiles/Makefile2:1831: recipe for target 'src/c++/lib/applications/GenerateSVCandidates/test/CMakeFiles/manta_unit_test_GenerateSVCandidates.dir/all' failed
> ...
>
> Kind regards
>
> Andreas.
>
> [1] https://anonscm.debian.org/git/debian-med/manta.git
>
> --
> http://fam-tille.de
>
>
--
http://fam-tille.de
Reply to: